Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2494 ATGTCTACACCGTTGGAACATGATTACATAGGCTTGGGAGAGACTCCATCAATGGATGGAAGCTCTTCTTCTGCTGTCACTGCCTCTGAGACTTCATCTCTAAACTTCAAAGAGACAGAGCTTAGGCTTGGGCTTCCTGGTACTGAGTCTCCTGAGAGAAAAACAGGTTGTGGGCTCTCTCTCTTTGGCAAGGATTTGCAGAAGAAGCATAATGTTTGTTCAGTGGCAAGCCCTCTGAAGAACCTTGTGGCTGGAGCTAAGAGGGGCTTCTCTGATGCTATTGATGGGTCTTCTGGGAAATGGGGTTTCTCTGTCAGTGATGGATCTGACGTTGATTTGGGAAAAGGACCTGCTTTGTTCTCTCCTAGAGGAGGGAATGTTGCTAAGCCTCTTGTTGGTTTAGACACTAAAACGCAGCCTAATAATACCACTGCAACAACAACCATCAAAGAGGTTGGTGTCGTTCCTCAATCTGCCAAACCGGTTCAGGAAAAGAATAATCAAGTTGCTGGAACAAATGGGCATGCCAGTGCTCCTGCGTCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTCAGAAAGAACACGATGGCCTCTAATTTGACAAAGAACAATGAAGAAGCTGAGGGAAAAACAGGGTTTGGTTGTCTCTATGTAAAAGTCAGCATGGATGGTGCCCCTTATCTTAGAAAGGTTGATCTCAAAACCTACAACAACTATATGGAACTTTCTTCAGCTCTCGAGAAGATGTTCCGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGGCTTCCTGGGAAAGATGGACTAAGTGAGAGTTCTTTGAGGGATCTTCTCCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGTGATTGGATGCTTGTGGGGGATGTTCCTTGGGAGATGTTCACTGACTCGTGTAGGAGACTGAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAAAAATCGAGGAGCCAAACCTAG 1017 0.4582 MSTPLEHDYIGLGETPSMDGSSSSAVTASETSSLNFKETELRLGLPGTESPERKTGCGLSLFGKDLQKKHNVCSVASPLKNLVAGAKRGFSDAIDGSSGKWGFSVSDGSDVDLGKGPALFSPRGGNVAKPLVGLDTKTQPNNTTATTTIKEVGVVPQSAKPVQEKNNQVAGTNGHASAPASKAQVVGWPPIRSFRKNTMASNLTKNNEEAEGKTGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFRCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQT* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2494 338 SUPERFAMILY CAD & PB1 domains 218 319 - -
Apr2g2494 338 MobiDBLite consensus disorder prediction 16 38 - -
Apr2g2494 338 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 330 IPR003311 GO:0005634|GO:0006355
Apr2g2494 338 Gene3D - 213 331 - -
Apr2g2494 338 MobiDBLite consensus disorder prediction 1 54 - -
Apr2g2494 338 PANTHER AUXIN-RESPONSIVE PROTEIN 4 330 - -
Apr2g2494 338 Pfam AUX/IAA family 38 329 IPR033389 -
Apr2g2494 338 ProSiteProfiles PB1 domain profile. 218 320 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2494 Apr-Chr2 29301824 29304833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2494 220 332 B3 DNA Binding Superfamily AT1G19850 32.174 5.57e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Apr2g2494 AUX_IAA 4.7e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2494 K14484 - gmx:100804423 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2494 2 29301824 29304833 Apr2g2494 2 29301824 29304833 ECH