Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2484 ATGACGGAAACAAACTGCTACGAAACTGCTAGCACCAGCACCAGCAACTCCAACTCAAACTCACAGAAAACAGAGGACAGAAAACAGAGCAGGCCCAAGAGAAACAGAGACAGTAGCAAGCACCCGGTTTACCACGGAGTACGAATGCGCAATTGGGGCAAATGGGTGTCAGAAATTCGTGAGCCCCGCAAGAAATCACGCATCTGGCTTGGAACTTTTGCAACCCCTGAAATGGCAGCACGAGCCCACGATGTTGCATCTCTGAGCATTAAGGGCCACACAGCGATCCTCAACTTTCCAAACATTGCAAACATGTTCCCCAGACCCGTCACGTTGACCCCACGTGACATCCAAGCCGCGGCTGCAGAAGCCGCCGCCATGGTGGAATTCGACCCTCACAAGTTACACTCCTCGCCTTCGTCAGAGTCCTCTGAGCTAAGCCAGATTGTGGAGCTTCCCAACATAGAAGAGAGCTTCGACTCGGTGGACTCGAGAACTGAGTTCGCGTTTATCGACTCGGTGGATAGTTGGGTTTACCCTCCGACCCCAATGGCGAGTTTTTCTGACATGATGTTTGGGGAACAGAGTTTTATCATAGAAAGCTCCGAGTGTGGATTCCACTTTGGGACCGATGGGTGTGAGATTCACCAGAAAACATGTTTGGTTTAG 669 0.5112 MTETNCYETASTSTSNSNSNSQKTEDRKQSRPKRNRDSSKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVASLSIKGHTAILNFPNIANMFPRPVTLTPRDIQAAAAEAAAMVEFDPHKLHSSPSSESSELSQIVELPNIEESFDSVDSRTEFAFIDSVDSWVYPPTPMASFSDMMFGEQSFIIESSECGFHFGTDGCEIHQKTCLV* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2484 222 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Apr2g2484 222 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Apr2g2484 222 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Apr2g2484 222 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Apr2g2484 222 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Apr2g2484 222 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Apr2g2484 222 Pfam AP2 domain 42 93 IPR001471 GO:0003700|GO:0006355
Apr2g2484 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 197 - -
Apr2g2484 222 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Apr2g2484 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 197 - -
Apr2g2484 222 MobiDBLite consensus disorder prediction 1 44 - -
Apr2g2484 222 MobiDBLite consensus disorder prediction 1 23 - -
Apr2g2484 222 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2484 Apr-Chr2 29249467 29250210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2484 13 193 AP2-EREBP Transcription Factor Family AT5G11590 53.695 1.44e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr2g2484 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2484 K09286 - gmx:100787471 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2484 2 29249467 29250210 Apr2g2484 2 29249467 29250210 ECH