Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2479 ATGGCAATGTCCTGCAAGGATGGTAAACAAGGATTGGACAACGGGAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGACTGCCCCAAACCCAGTTCCATTCGCCGCCAGCAGCTCATTCGTGAGTGCCCTATTCTCTCTAACATTGAACCCAAGCAAATCAAAGTGTGGTTCCAGAACAGAAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCGCGGCTGCAAGCTGTAAATAGGAAGCTGACTGCCATGAACAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAATTGGTGTATGAAAATGGCTATTTTCGTCAACATACCCAAAATCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGTGGCCTAGTGGGTCTTGAACCCACAAGGGTTGCAGAAATTCTCAAAGATCGGCCTTCATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACTGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCCCGTGACTTCTGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAACACTCAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTTCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCATATAGTTGATCATATGGATTTAGAGCCATGGAGTGTTCCTGAAGTACTGCGCCCCCTGTATGAATCATCAACAGTGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCAACTGAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGGAGACGACCGGCAGCCCTTCGAGCACTTTGCCAGAAATTGAGCCGGGGTTTCAACGAGGCGATCAATGGGTTTACTGATGAGGGATGGTCAGTTATGGGCAATGATGGTGTTGACGATGTTACAGTTCTTGTGAATTCATCGCCTGACAAATTAATGGGTCTGAATCTCTCCTTTGCCAATGGATTCCCATCTGTCAGTAATACAGTCCTATGTGCCAAAGCTTCAATGCTATTGCAGAATGTACCTCCTGCCATTCTGCTAAGATTCCTACGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCGTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCTTGTCAGGATCTCGAGTTGGAAATTTTGGGGGTCAAGTTATTCACCCTTTAGCCCACACTATCGAGCATGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTGCTAATTCTCCTGAAGAAACAATAATGCCCAGAGAAATGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAAAATGCTGTTGGAACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATAATTCCTCTTGATTCTGGAAAGGAAGCATCCAACCCAAATCGCACCCTTGACCTGGCATCTGCCCTTGACATTGGCCCTGCTGGAAACAGAACATCAAATGATTATTCTGGAAATTCTGGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAACATGTTGCAACCATGGCACGACAATATGTTCGTAGCATTATATCATCTGTCCAAAGGGTAGCATTAGCTCTTTCACCTTCTCATTTGAGTTCACAAGCTGGGCTTAGAACACCACTGGGTACTCCTGAAGCTCAAACACTTGCTCGTTGGATCTGCAATAGTTATAGGTGCTACTTGGGTGTTGAGCTACTTAAATCTAATAATGAGGGGAACGAATCTTTGCTGAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCGTTGCCAGTATTCACTTTCGCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCTCTACAAGATATAACGTTAGAGAAAATATTTGATGATCATGGTCGAAAGATTCTGTGCTCAGAGTTTCCCCAAATTATTCAACAGGGTTTTGCTTGCCTTCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGACCTATCTCATATGAAAGAGTAGTGGCTTGGAAAGTGCTGAACGAAGAAGAGAATGCTCATTGTATTAGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2322 0.4526 MAMSCKDGKQGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRQLRQISHEVSQSNVTGWGRRPAALRALCQKLSRGFNEAINGFTDEGWSVMGNDGVDDVTVLVNSSPDKLMGLNLSFANGFPSVSNTVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRVGNFGGQVIHPLAHTIEHEEFLEVIKLEGIANSPEETIMPREMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDIGPAGNRTSNDYSGNSGCMRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEENAHCISFMFMNWSFV* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2479 773 Pfam MEKHLA domain 630 772 IPR013978 -
Apr2g2479 773 SUPERFAMILY Homeodomain-like 14 79 IPR009057 -
Apr2g2479 773 Coils Coil 71 112 - -
Apr2g2479 773 Pfam START domain 114 304 IPR002913 GO:0008289
Apr2g2479 773 Gene3D - 117 308 IPR023393 -
Apr2g2479 773 PANTHER CLASS III HD-ZIP PROTEIN CNA1 123 773 - -
Apr2g2479 773 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 122 - -
Apr2g2479 773 SMART HOX_1 13 79 IPR001356 GO:0003677
Apr2g2479 773 SUPERFAMILY Bet v1-like 118 284 - -
Apr2g2479 773 CDD homeodomain 16 76 IPR001356 GO:0003677
Apr2g2479 773 ProSiteProfiles START domain profile. 141 301 IPR002913 GO:0008289
Apr2g2479 773 SUPERFAMILY Bet v1-like 335 531 - -
Apr2g2479 773 Gene3D - 10 82 - -
Apr2g2479 773 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 123 773 IPR044830 GO:0003700
Apr2g2479 773 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 122 IPR044830 GO:0003700
Apr2g2479 773 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Apr2g2479 773 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Apr2g2479 773 SMART START_1 95 305 IPR002913 GO:0008289
Apr2g2479 773 CDD bZIP 68 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2479 Apr-Chr2 29206067 29213243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2479 1 725 Homeobox Transcription Factor Family AT1G52150 76.641 0.0 1225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr2g2479 START 2.1e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2479 K09338 - gmx:100800165 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2479 2 29206067 29213243 Apr2g2479 2 29206067 29213243 ECH
Apr2g2479 2 29206067 29213243 Apr2g2479 2 29206067 29213243 PCT