Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2474 ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGACACAACTCCCGAACGTGTCCCACAAGAGGGGGCGGCGGAGGAGTCAAGCTTTTCGGAGTTAGGTTAGGAAATGGATCCATAATTAAGAAAAGTGCAAGCATGGGCAACCTCAACCATTCCTCCAATCCAGGTTCACCCTGTTTCGACCTGCCTCATGAGGGAGACGCCTATTTGTCCGATGACCCAGCTCATATGTCCACCCTCGCTAACCGCCGCGGAGAAAGAAAAAAAGGTGTTCCATGGACTGAAGAAGAACATCGGCTGTTTTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCACGTAGGTTTGTGGTATCAAGGACTCCTACTCAAGTAGCAAGTCATGCCCAAAAGTATTTTATCCGGCAGAGTCATGCTACCAGGAGAAAGAGACGTTCCAGTCTTTTTGACATGGTTCCAGACATGTCTTCAGATCCACCCTCGGTGCCAGAAGAACAAGTGCTGTTTCCACCATCCGATAACTCACAACCCTTTAATGGAAAATCACAGCCTTCACTAAATCTCTCCCTTAAATCCGAATTTGAACCCATGGAAACTACTTCTCAAGAAAAGATGGAAGAGGCCAATGAAACTACGATGGGATCAAATGGACTGACACCAATGGCACATCATGGATTCATGTCTGCTTATTTACCTGTTCAATTTTCCACATGGCCATCAATTGCAGCTCCCTTTGAAGCAGTTAATGGAAGAGAGAAATCCCAACATCAGGTCCTCAAGCCAATCCCGGTGATTCCAAAGGAACCTGTGAATGTTGATCAACTTGTGGGAATGTCGCATCTCAGCATTGGGGACAAACAAGTACTTGACATAGAGCCTTCCCCACTTTCCTTAAAGTTGTTAGGGGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGCAGTTCAGATTTAAACAGTGGCAAGAACAATCCAATTCAAGCGGTTTGA 1011 0.4728 MTRRCSHCSNNGHNSRTCPTRGGGGGVKLFGVRLGNGSIIKKSASMGNLNHSSNPGSPCFDLPHEGDAYLSDDPAHMSTLANRRGERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARRFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMSSDPPSVPEEQVLFPPSDNSQPFNGKSQPSLNLSLKSEFEPMETTSQEKMEEANETTMGSNGLTPMAHHGFMSAYLPVQFSTWPSIAAPFEAVNGREKSQHQVLKPIPVIPKEPVNVDQLVGMSHLSIGDKQVLDIEPSPLSLKLLGEPSRQSAFHANAPVGSSDLNSGKNNPIQAV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2474 336 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 88 140 IPR006447 GO:0003677
Apr2g2474 336 Gene3D - 93 142 - -
Apr2g2474 336 CDD SANT 92 137 IPR001005 -
Apr2g2474 336 MobiDBLite consensus disorder prediction 172 193 - -
Apr2g2474 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 141 IPR017930 -
Apr2g2474 336 Pfam Myb-like DNA-binding domain 92 137 IPR001005 -
Apr2g2474 336 PANTHER OS01G0187900 PROTEIN 1 330 - -
Apr2g2474 336 MobiDBLite consensus disorder prediction 1 18 - -
Apr2g2474 336 SMART sant 89 139 IPR001005 -
Apr2g2474 336 PANTHER TRANSCRIPTION FACTOR KUA1 1 330 - -
Apr2g2474 336 MobiDBLite consensus disorder prediction 315 336 - -
Apr2g2474 336 SUPERFAMILY Homeodomain-like 87 141 IPR009057 -
Apr2g2474 336 MobiDBLite consensus disorder prediction 314 336 - -
Apr2g2474 336 MobiDBLite consensus disorder prediction 1 22 - -
Apr2g2474 336 ProSiteProfiles SANT domain profile. 93 141 IPR017884 -
Apr2g2474 336 ProSiteProfiles Myb-like domain profile. 85 137 IPR001005 -
Apr2g2474 336 MobiDBLite consensus disorder prediction 154 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2474 Apr-Chr2 29156736 29160090 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr2g2474 Myb_DNA-binding 2.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2474 - - gmx:778036 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2474 2 29156736 29160090 Apr2g2474 2 29156736 29160090 ECH