Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2470 ATGGATGAAAGGTCAAGAAACGAGGTATCTCCTCAGCTGTTGGATTTGATCTCAAACGAGAGAGAGTGGCACAAGAGCAGAGAAGAAGGAAAGTGTTCAGAGGAGAGGAAGCTTGAGCTGAGGCTTGGTCCACCTGGTGGTGAGGACTGGTCTCACAGTGGAAAGATGAAGAACAGCAACACAGAAAGAGAAGAGTCTCTACTCTCTCTTGAGTTGCAGAATGGTGACAACAAAGTGTTTTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCTGCACCAGTGGTGGGTTGGCCTCCAATTCGCTCTTTCAGGAAGAACCTTGCAAGCAGCAGCAGTGCTTCTAAGGCACCACCTGAGTCACAGCATGAGCAGCATAACAAGGTTGCAGGTAAAAAACCTGTTGACAATTATGGTAAAGGTTTGTTTGTCAAGATCAACATGGATGGAGTACCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAGCCTCTCTTCTGCTGTGGATGAGCTATTCAGAGGCCTTCTTGCAGCTCAAAGAGATTCCTCTGCTGGAGGAGTTCACAACAAGGAGGAAGAGAAAGCGATTACTGGTTTATTGGATGGAAGTGGGGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTGGTTGGGGATGTGCCATGGCAGATGTTCGTATCAACAGTGAAGAGGCTGCGGGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAAGAGAAGATGTCACTTGGCTCCACAATGAATTGA 828 0.4698 MDERSRNEVSPQLLDLISNEREWHKSREEGKCSEERKLELRLGPPGGEDWSHSGKMKNSNTEREESLLSLELQNGDNKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSSASKAPPESQHEQHNKVAGKKPVDNYGKGLFVKINMDGVPIGRKVDLNAYDSYESLSSAVDELFRGLLAAQRDSSAGGVHNKEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWQMFVSTVKRLRVLKSSELSAFTLGSKQEKMSLGSTMN* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2470 275 Gene3D - 145 265 - -
Apr2g2470 275 MobiDBLite consensus disorder prediction 19 43 - -
Apr2g2470 275 MobiDBLite consensus disorder prediction 114 129 - -
Apr2g2470 275 MobiDBLite consensus disorder prediction 65 100 - -
Apr2g2470 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 266 IPR003311 GO:0005634|GO:0006355
Apr2g2470 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 266 - -
Apr2g2470 275 ProSiteProfiles PB1 domain profile. 150 253 IPR000270 GO:0005515
Apr2g2470 275 Pfam AUX/IAA family 38 258 IPR033389 -
Apr2g2470 275 SUPERFAMILY CAD & PB1 domains 146 250 - -
Apr2g2470 275 MobiDBLite consensus disorder prediction 19 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2470 Apr-Chr2 29125529 29129227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2470 154 264 B3 DNA Binding Superfamily AT4G23980 34.234 1.47e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr2g2470 AUX_IAA 2.3e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2470 K14484 - gmx:100804593 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2470 2 29125529 29129227 Apr10g0941 10 21944207 21948189 ECH
Apr2g2470 2 29125529 29129227 Apr2g2470 2 29125529 29129227 ECH
Apr2g2470 2 29125529 29129227 Apr2g2470 2 29125529 29129227 PCT