Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2469 ATGGGGAAAGCTTCGAGGTGGTTGAAGGGGTTGTTGGGAATGAAGAAAGAGAAGGGTTGTGAGTGTTCGGAGTCACTGGGTGATGCCAAGAATGAGAAGAAACGATCAGGGAAGGATGAAGTGAGTGTTACGGCTTTTGATCATGCTTGGATCAGACCCTATGTTGCTGAAAAAGAGGATGAGAAGAACAAACACGTAATTGATGTGGCTGATGCTGTTGTGAGGTTGAGAAGCTATGAGAGAGGCACGTTGTTTTGTGGAAGCAGAGAGAGGTGGGCTTCTGTGAAGATTCAATCTTTTTTCAGAGGTTATTTGGCGAGAAAGGCTCTTAGAGCACTCAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGGTTTCTTGTGCGTAAAAGGGTTGCTGCAACTCTTCACAGTATGCAAGCTATGATAAGAGCTCAAGCTGTTGCCCGATCGCAGCGAGCTCGTCGCTCCATGTACAAGGAGAATAGATTTCATGCAGAAATTCGTTCCAGAAAACATTTGCAACTGTTTGATGAAACAAGAAATGGAAGGGTACCCATTTATACTAAGACACCCTTGAATGGATTTGATGAGAACCCAAAAGTTGTTGAGATTGACACTCACATGCTCCATTCAAGATCTAAGAGCATTGCCACAACAAAGTCTGAATGTGGAGAAGACCTGCAATATCAAGCAATGTCAGTTCCAAGTCGAGTATCAGTTCATGAATTCCGACATCCTCAAAGTTTACAGTGGTACTTCAATGTTGATGAGCGCATGTTATCCACAGCTCAGAGCACCCCTCGTTTTGCAGATTGTATGCTAACACCAAATACCCCACCTACTCCAGTGAAGAGTGTTTGTAGAGACACCTTCGTTAGGCCTTGCTCCAATTCCCCAAACTACATGGCCAATACTCAATCATCTAAGGCAAAAGTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTCAGCTTAAGACAAGGATTTCACTCAGTGAAATGATGGCTGCAAGAAATAGCATTAGTGGTGTTAGAATGAAGTGCTCAACCAACCCAAATACTCAAGATTATTGTTGTTTTTGA 1083 0.4331 MGKASRWLKGLLGMKKEKGCECSESLGDAKNEKKRSGKDEVSVTAFDHAWIRPYVAEKEDEKNKHVIDVADAVVRLRSYERGTLFCGSRERWASVKIQSFFRGYLARKALRALKGLVKIQALVRGFLVRKRVAATLHSMQAMIRAQAVARSQRARRSMYKENRFHAEIRSRKHLQLFDETRNGRVPIYTKTPLNGFDENPKVVEIDTHMLHSRSKSIATTKSECGEDLQYQAMSVPSRVSVHEFRHPQSLQWYFNVDERMLSTAQSTPRFADCMLTPNTPPTPVKSVCRDTFVRPCSNSPNYMANTQSSKAKVRSHSAPKQRPQLKTRISLSEMMAARNSISGVRMKCSTNPNTQDYCCF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2469 360 PANTHER IQ-DOMAIN 5-RELATED 1 360 - -
Apr2g2469 360 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Apr2g2469 360 MobiDBLite consensus disorder prediction 304 324 - -
Apr2g2469 360 Pfam IQ calmodulin-binding motif 117 131 IPR000048 GO:0005515
Apr2g2469 360 Pfam IQ calmodulin-binding motif 91 111 IPR000048 GO:0005515
Apr2g2469 360 SMART iq_5 89 111 IPR000048 GO:0005515
Apr2g2469 360 SMART iq_5 112 133 IPR000048 GO:0005515
Apr2g2469 360 ProSiteProfiles IQ motif profile. 138 167 IPR000048 GO:0005515
Apr2g2469 360 Gene3D - 48 116 - -
Apr2g2469 360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 133 IPR027417 -
Apr2g2469 360 Pfam Protein of unknown function (DUF4005) 277 342 IPR025064 -
Apr2g2469 360 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Apr2g2469 360 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2469 Apr-Chr2 29112914 29114547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2469 1 346 IQD Protein Family AT3G16490 48.021 1.28e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2469 - - gmx:100806729 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2469 2 29112914 29114547 Apr2g2469 2 29112914 29114547 ECH
Apr2g2469 2 29112914 29114547 Apr2g2469 2 29112914 29114547 PCT