Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2459 ATGGATGGTCTAAGTTGGGATGCCTCATCGCAGCTTATTGCCAACATACCGGTCTTGTGGAGCGCTCAGTCTCAAGACCTTGAAGAAGAATACTACTCCATGGCCAATATAAGTTCAAGTGTAGTTAATCAAACATGTTATCCATATCCCAGTTCTGAAAAAGTGATTGACATGGTTCAGTCATCAGCTGCTACCACTTCTGAGATAACAAACATGATGCCAAACACAAATCTGTCACATAGAACAGCAACCATGCCTGTGAAATCAGGAGCAGCTGGAGCCAGTTGGGAAGATGCTTTAACATCTCAACCATGCCCGTCCCTTTCAGTCAACGTGAAGCAAACTAGCAATTATATGCCTGATTTCAACATGGCCCACCAACAACACCTCATCAATGGCTCACAAAAAAGCAAGGCTACTTGCTCTCCTGAGTCATTTGATTGCTTGCTTTCAGCTACTAATAATAGCAATACTGACACGTCGGTCGAAGATGATGGCATTTCCATGATTTTCTCTGACTGCAGAAATTTGTGGAACTTCAGTTATGGCAGTGCAGTTTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATACTAGAAACAAAGACGTGAGGTATGCAGTCAATGAGCTCGATGAAACAGTATCTCAAAGTTCCTCTGATCAATATCTCAGTCAAGGAAAAATTATAGACTATGAAGTTAATTGCACCAAAAGGAGCAATGATCATTATGAGTTGATCAAAGTTGCTGCCAGTGATTCCTGCTTTAGCATTGCGCAGAATGCTTCTGACACTGAAGGTGGTTTCAAGCTTATCTCAGAGAATTCACCGAAGTCCAAGAAACCCAGGTGGGAGAAGCGTCCGGGTTCATCAAATATCAACTTCCAGGAACCAAATTCATCCGTGTCACCTTGCTTTGAAGAACCCGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCATGGAAGTGGTGGAAAAGCCTAAAAGGAAGAATGTTAGGATATCCACTGATCCACAGACCGTGGCTGCCAGGCAAAGAAGGGAGAAAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTTAAGTTTCTCAGGTCACAAGTCAAAGCACTAGAAAATCTAGGTAACAAGCTTGACACAATGAATTGTCCTCCTACTAGCATAGGCTTCTCTTTCAACCCTTCTTTTCCTATACAAACAAATTTCCCCATCAGAAACCCTAGCAGCCACATCTAA 1329 0.4312 MDGLSWDASSQLIANIPVLWSAQSQDLEEEYYSMANISSSVVNQTCYPYPSSEKVIDMVQSSAATTSEITNMMPNTNLSHRTATMPVKSGAAGASWEDALTSQPCPSLSVNVKQTSNYMPDFNMAHQQHLINGSQKSKATCSPESFDCLLSATNNSNTDTSVEDDGISMIFSDCRNLWNFSYGSAVSSGESESNASNTRNKDVRYAVNELDETVSQSSSDQYLSQGKIIDYEVNCTKRSNDHYELIKVAASDSCFSIAQNASDTEGGFKLISENSPKSKKPRWEKRPGSSNINFQEPNSSVSPCFEEPDPEAIAQMKEMIYRAAAFRPVNLGMEVVEKPKRKNVRISTDPQTVAARQRREKISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDTMNCPPTSIGFSFNPSFPIQTNFPIRNPSSHI* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2459 442 MobiDBLite consensus disorder prediction 288 302 - -
Apr2g2459 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Apr2g2459 442 SMART finulus 352 401 IPR011598 GO:0046983
Apr2g2459 442 Coils Coil 385 405 - -
Apr2g2459 442 Pfam Helix-loop-helix DNA-binding domain 356 395 IPR011598 GO:0046983
Apr2g2459 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 411 IPR036638 GO:0046983
Apr2g2459 442 PANTHER TRANSCRIPTION FACTOR BHLH87 1 439 - -
Apr2g2459 442 MobiDBLite consensus disorder prediction 267 307 - -
Apr2g2459 442 CDD bHLH_AtIND_like 347 405 - -
Apr2g2459 442 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 439 IPR045843 GO:0003700|GO:0006355
Apr2g2459 442 Gene3D - 351 414 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2459 Apr-Chr2 29039810 29041138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2459 110 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.867 4.66e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g2459 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2459 - - gmx:100793830 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2459 2 29039810 29041138 Apr2g2459 2 29039810 29041138 ECH
Apr2g2459 2 29039810 29041138 Apr2g2459 2 29039810 29041138 PCT