Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2454 ATGGCGACAGTACCAGGTCAACTCATTTGGGAGATTGTGAAGAAGAACAACTCTTTCTTGGTGAAAGAGTTTGGTAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAACCCAACAATCTCTACAACCTCAACTCCTTCAAGTTCTCTGGTTTGGCAAACAAAAAGACTGTTACTATTCAACCTGCGGGTAAAGATCAGTCTGTGTTGCTAGCAACAACCAAGACAAAGAAGCAAAACAAGCCTGTTGCATTGTATCACAAGTCTGTCATGAGGAAGGAGTTTAGGAGGATGGCAAAGTCAGTGCAAAATCAGGTAGCAGATAACTACTACAGGCCTGATCTCAAAAATGCATCTCTCGCAAGATTGAGTGCTGTCAATAGGAGCCTCAAAGTTGCCAAGTCTGGTGTGAAGAAGAGAAACAGACAAGCTGTGAAGGTCCCTGGAGAGAAGAGTTAA 456 0.4452 MATVPGQLIWEIVKKNNSFLVKEFGRGTQSVQFSREPNNLYNLNSFKFSGLANKKTVTIQPAGKDQSVLLATTKTKKQNKPVALYHKSVMRKEFRRMAKSVQNQVADNYYRPDLKNASLARLSAVNRSLKVAKSGVKKRNRQAVKVPGEKS* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2454 151 MobiDBLite consensus disorder prediction 132 151 - -
Apr2g2454 151 Gene3D - 6 133 - -
Apr2g2454 151 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Apr2g2454 151 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
Apr2g2454 151 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2454 Apr-Chr2 29011661 29014001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2454 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.727 4.17e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2454 K02903 - gmx:100500189 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2454 2 29011661 29014001 Apr10g0967 10 22170421 22172661 ECH
Apr2g2454 2 29011661 29014001 Apr2g2454 2 29011661 29014001 ECH
Apr2g2454 2 29011661 29014001 Apr2g2454 2 29011661 29014001 PCT