Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2445 ATGGATGCCGAAGCTAACCCTCCTCTAAACCCAACTAAAAGACACAAATGCTCGGCATGCTATAAACAATATAAGAAGAAAGAACATCTTATTGAGCACATGAAAACCTCGTACCACTCTGTCCATCAGCCTAGATGTGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAGCATCTTACCGGTCCTTTGCCAAAAGGTCTTTGCTCGAAGATTTTTTCTCAACAGGGTTGTCAACTTTGTTTGACACTATTTGATAGTCCCACATCTCTCCTTGACCACAGAGAAATATGTCGCCTATCTGCCCCCACCCGTCTAGGAACAAATGATTTGCCCTATACAGGTTCCCAAATTGATTGTCAAGATTCTTCTGATGAAAACCGCGGTGGCGGGCGCCCTGGAGCAGTTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCACTGGAACTTTGTGCTAGAGTTTGCTTGGTTGATGAAGATGAGAACTTAATTTTCCATACTTATGTACAGCCTCAAATCCCTGTTACTAATTATAGATATGATATAACAGGATTGACTGAAGTGCATCTCAGAGATGCCATGCCACTCAAGGAAGTTCGAGAAAAGGTATTGCAAATTCTATACAATGGAGAGTCCATTGGCAAAGTTAGACTGGACGGTGGGAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACATGATTTAGATTGCTTGAAAATGAGTTATCCCGATCATATGCTGAGAGACACTGCAAAGTACCGTCCATTGATGAAAACAAACTTGGTCAGTCATTCACTCAAGTATCTTACCCGAACATATCTAGGTTATGACATACAATCCGGCACTCATGACCCATATGAAGATTGTATTTCTGTCATGAGACTGTTTAAGAGAATACGAGCGCAAAATCATCCAGAGGAAGGCCATGGAACTTTGACTCCGAATAACAACATTGTTGGCATGACTGATAGCTGGAGATCCAAGGAGCTTGACAACCTCACGCCAGATGAGCTATACGCACTGTCAAGATCAGACTATAAATGCTGGTGTTTAGATTTGAGGCCAAGATTGGCAGCCTGA 1098 0.4335 MDAEANPPLNPTKRHKCSACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPKGLCSKIFSQQGCQLCLTLFDSPTSLLDHREICRLSAPTRLGTNDLPYTGSQIDCQDSSDENRGGGRPGAVAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVQPQIPVTNYRYDITGLTEVHLRDAMPLKEVREKVLQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMSYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLFKRIRAQNHPEEGHGTLTPNNNIVGMTDSWRSKELDNLTPDELYALSRSDYKCWCLDLRPRLAA* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2445 365 Gene3D - 135 317 IPR036397 GO:0003676
Apr2g2445 365 SUPERFAMILY Ribonuclease H-like 139 305 IPR012337 -
Apr2g2445 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Apr2g2445 365 PANTHER EXONUCLEASE FAMILY PROTEIN 12 361 - -
Apr2g2445 365 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Apr2g2445 365 Gene3D Classic Zinc Finger 3 65 - -
Apr2g2445 365 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Apr2g2445 365 Pfam Exonuclease 139 302 IPR013520 -
Apr2g2445 365 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 361 - -
Apr2g2445 365 SMART exoiiiendus 137 311 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2445 Apr-Chr2 28944838 28948153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2445 1 358 C2H2 Transcription Factor Family AT3G27970 52.793 6.90e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2445 K18327 - gmx:100805841 675.626