Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2440 ATGAGCCGTTACGACAGCCGCTCCGGCGACCCTGCTTCCTACCGCGACCGAAGAAGTGATTCGGGGCTAGGTGCATCTTCAGCTACAGGCTACGGTGGTTCAAGCAGAAGGGAGTACGACGACGGCGGGTCAGGGTCGCCCCGGAAACTTAATTTGGATGGGTTGCCTCATTTCGAGAAAAACTTCTACAACGAAGCAATCGCCGTTAGGGAAATGACGGAGGCCGAAGTTAACGAGTATCGTCAACGGCGTGATATCACCGTCGAAGGCCGAGATGTTCCGAAACCTGTTAAAAGCTTTCACGATGTCGGTTTTCCGGAATATGTAATGCAAGAAATTAAGAAAGCTGGGTTTGTTGAACCTACACCGATTCAGTCCCAGGGTTGGCCTATGGCTCTGAAGGGACGTGATCTTATAGGAATTGCGGAAACGGGATCAGGGAAGACGCTTGCGTACTTGTTGCCTGCAATTGTGCACGTTAATGCCCAGCCAATTTTAGATCCTGGGGATGGACCTATTGTGTTAGTTTTGGCTCCGACACGTGAACTTGCTGTCCAGATACAACAAGAGGCTACTAAATTTGGTGCCTCATCTAGGATTAAGAGTACGTGCATATATGGTGGGGTTCCAAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCCACTCCGGGAAGGTTGATTGATATGCTTGAGTCAAATCATACTAACTTGCGGAGGGTTACCTACCTGGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATACGGAAGATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCCACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAATTATAGGTTCTCCAGATTTAAAAGCTAACCATGCTATACGGCAATATGTTGACATTATTCCTGAAAGGCAAAAATATGATAAATTGGTGAAGTTGCTGGAGGATATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATTACTAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGCCCTATTATGACTGCAACAGATGTGGCAGCTCGTGGTTTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTTCCGGGATCACTTGAGGATTATGTTCATCGCATTGGTCGAACTGGGAGAGCTGGTGCAAAAGGAACTGCATATACATTCTTCACAGCTGCCAATGCCAGATTTGCAAAGGAACTTATATCCATACTTGAGGAAGCTGGACAGAGAGTGAGTCCTGAATTGGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAGGAGGCTTCCGAGACCGTGGAAGGGGTTATGGCAGCGGTCGCCCATGGAGCTGA 1509 0.4732 MSRYDSRSGDPASYRDRRSDSGLGASSATGYGGSSRREYDDGGSGSPRKLNLDGLPHFEKNFYNEAIAVREMTEAEVNEYRQRRDITVEGRDVPKPVKSFHDVGFPEYVMQEIKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSPDLKANHAIRQYVDIIPERQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSPELAAMGRGAPPPPSGGFRDRGRGYGSGRPWS* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2440 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 250 258 IPR000629 -
Apr2g2440 502 CDD DEADc_DDX5_DDX17 109 304 - -
Apr2g2440 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 304 IPR014001 -
Apr2g2440 502 Pfam Helicase conserved C-terminal domain 329 438 IPR001650 -
Apr2g2440 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 477 IPR001650 -
Apr2g2440 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 67 488 - -
Apr2g2440 502 Gene3D - 308 478 IPR027417 -
Apr2g2440 502 PANTHER LD32873P 67 488 - -
Apr2g2440 502 Coils Coil 63 83 - -
Apr2g2440 502 MobiDBLite consensus disorder prediction 1 51 - -
Apr2g2440 502 Gene3D - 61 307 IPR027417 -
Apr2g2440 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 454 IPR027417 -
Apr2g2440 502 SMART helicmild6 357 438 IPR001650 -
Apr2g2440 502 CDD SF2_C_DEAD 317 447 - -
Apr2g2440 502 MobiDBLite consensus disorder prediction 473 502 - -
Apr2g2440 502 Pfam DEAD/DEAH box helicase 122 293 IPR011545 GO:0003676|GO:0005524
Apr2g2440 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 98 126 IPR014014 GO:0003724
Apr2g2440 502 MobiDBLite consensus disorder prediction 1 17 - -
Apr2g2440 502 SMART ultradead3 117 320 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2440 Apr-Chr2 28916033 28920946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2440 86 458 Eukaryotic Initiation Factors Gene Family AT3G19760 34.492 2.19e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2440 K12823 - gmx:100790464 907.901