Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2428 ATGAAGGGTTTGGTGTTCCAACAACAACCGCAGCAGCTACCATTAGTGGAGGAAAACATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCCTCAGGCAACAGGAACGAAATTGTTACTGATTACTCTCAACAATACTTCGCTCCACCATCAACTCAAACTCAGCCTCAAGTTAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTGTCGCCTTGTCTCCAAAGACTCTTCTGGCCACCAACAGGTTCATTTGTGAGATCTGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGGCACAACTTACCATGGAAACTGAAGCAGAGAACAAACAAAGAGATAAGGAAGAAGGTGTATGTGTGTCCAGAACCCACATGCGTGCACCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGTATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGTTTCAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCAGTGACAGGGATAGGGAACCCACTTCATCACCCTTCTCCAACTCCACAACCACAACCAGTGAACCTTGAAGACATGCATGGTTTCCCACTGAAGAAAGAGCAACAGAGTTTCATACCCCCTTGGCTTGCTCCACCCACCGTTGATCTCTCTTCATCTTCATCATCATTCTTCACCACTCCAAGGTTGGATCAAGTTCAAGACCATGAAAACCCTAACCCTAGACTCGGTCCCACTCTCCCAGCGTTCCAACCAGCACCTTCCTCTCCTCACATGTCAGCCACAGCGTTGCTTCAGAAAGCAGCACAAATGGGTGCAACCATGAGCAAAACAGGTTCCATGATTAGGACCCACCAACACACTCACGTGTCTGCTGACTCAAGTTTCAATTTGTCCTCACGTGATGACCAGATCATGACCACCACTAACCATGCCTTGGCACCTTATGCCCATAAAGCTGCTTCTGCTGGTGATGCTACTGGTGGTGGTTCTGGTGGCGGTGGTGTTCCTTCATCACTCCTTCATCATGTTATCGATTCTTTCTCTTCTCCCTTTGAAGGGACTTCTTTTGAGGATGCTTTTGCTGGCCACGGTGCCATTGCTAAAACAACCGCCGCCGATGATGGCAGCGCCGGAGGAAGTGAAGGGTTGACGAGAGATTTCTTGGGTCTTAGACCCCTCTCTCACACTGATATCCTCAACATTGCTGGCATTGGTAACTGCATGAACTCCTCCCAACATAACCAATCCCAAAAGCCTTGGCAAGGTTAA 1446 0.482 MKGLVFQQQPQQLPLVEENMSNLTSASGEASASSGNRNEIVTDYSQQYFAPPSTQTQPQVKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSSFRRDSFITHRAFCDALAEESARAVTGIGNPLHHPSPTPQPQPVNLEDMHGFPLKKEQQSFIPPWLAPPTVDLSSSSSSFFTTPRLDQVQDHENPNPRLGPTLPAFQPAPSSPHMSATALLQKAAQMGATMSKTGSMIRTHQHTHVSADSSFNLSSRDDQIMTTTNHALAPYAHKAASAGDATGGGSGGGGVPSSLLHHVIDSFSSPFEGTSFEDAFAGHGAIAKTTAADDGSAGGSEGLTRDFLGLRPLSHTDILNIAGIGNCMNSSQHNQSQKPWQG* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2428 481 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Apr2g2428 481 Gene3D Classic Zinc Finger 88 188 - -
Apr2g2428 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Apr2g2428 481 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Apr2g2428 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 465 - -
Apr2g2428 481 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 22 465 - -
Apr2g2428 481 MobiDBLite consensus disorder prediction 50 73 - -
Apr2g2428 481 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Apr2g2428 481 SMART c2h2final6 131 161 IPR013087 -
Apr2g2428 481 SMART c2h2final6 166 186 IPR013087 -
Apr2g2428 481 SMART c2h2final6 90 112 IPR013087 -
Apr2g2428 481 MobiDBLite consensus disorder prediction 290 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2428 Apr-Chr2 28833679 28837016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2428 16 470 IDZ Gene Family AT1G55110 49.398 9.90e-134 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g2428 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2428 K25870 - gmx:100820609 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2428 2 28833679 28837016 Apr2g2428 2 28833679 28837016 PCT