Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2422 ATGGATTATCATCTCTCTCAACACTCTCCATTGGAATTGGAGTCTCACTCCTTTAATGTTGATGCCAACGATGATCTGCAAAGCACCGTAAAGCCCTCCTTCAATCGACGCGAGTCCTCTTTAGGAAAACTCTTCGTTGGAGGCATATCTTGGGAGACTTCTGAAGAGTCATTTTTTAAATACTTCAACAAATATGGAGAAGTAATAGATTCAGTGATAATGATGAATAGACATTCTGGACGACCACGGGGGTTTGGCTTTGTAACATTTGCTGATTCAGCTGTAGCAGATGAAGTTCTGGCACACGAACATACTATAGATGGCAGAGTGGTTGAAGTCAAGAGGACAGTCCCTAGGGAGGACATGGAAGTTGTTGGAGTATTAAAAACAAAAAAGATATTTGTCGGTGGGATACCCCAGTTTTTCACTGATGATGAGTTAAGGGAGTACTTTTCTCCTTATGGTAATATTGTTGAGTGCCAAATCATGCTAGATCACAAGACTGGGAGATCTAGAGGCTTTGGATTTGTCACTTTTGACAGTGAAGATTCGGTTGATAATGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCCAAAAGATCTGGATTTGATTACAGCAGCACCTCACGAAAGTCATATGGTGGTTTTGGCAGTGGTATGGATGGATATGGTGGAAATAATTCTAGAATTCATAACCATGGAAAAAGGGGCGGACAGTATACAGATTCTGGAATGAACGAAGCATATAGCCATTTCGAGGGGAGTTACAATGGAAGCTCTACCGCTGCTTATGGTGGCTATTGTGGATATGGTTATGGATTTGGATATGGTGGGCCAATGTATTGCTTTGGTGGTTATGGAGTCAATTCTTATGGTAATCCTGGTGGTTATGGAATTGGTGGTATTACTGCCTATGGACTTGGTAATGCATATGGAAGAACTGCTGGTTTCAATCGTGCTGGTGGCTATGACAGTGGAAAAGTGGCTGAGAAGGATGATGGTACTGCTGGTAGGTACCATCCTTATTGGAAGTGA 1068 0.4195 MDYHLSQHSPLELESHSFNVDANDDLQSTVKPSFNRRESSLGKLFVGGISWETSEESFFKYFNKYGEVIDSVIMMNRHSGRPRGFGFVTFADSAVADEVLAHEHTIDGRVVEVKRTVPREDMEVVGVLKTKKIFVGGIPQFFTDDELREYFSPYGNIVECQIMLDHKTGRSRGFGFVTFDSEDSVDNVFSVGKIHEIGGKQVEIKRAEPKRSGFDYSSTSRKSYGGFGSGMDGYGGNNSRIHNHGKRGGQYTDSGMNEAYSHFEGSYNGSSTAAYGGYCGYGYGFGYGGPMYCFGGYGVNSYGNPGGYGIGGITAYGLGNAYGRTAGFNRAGGYDSGKVAEKDDGTAGRYHPYWK* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2422 355 Gene3D - 42 123 IPR012677 -
Apr2g2422 355 SMART rrm1_1 43 114 IPR000504 GO:0003723
Apr2g2422 355 SMART rrm1_1 132 205 IPR000504 GO:0003723
Apr2g2422 355 SUPERFAMILY RNA-binding domain, RBD 129 238 IPR035979 GO:0003676
Apr2g2422 355 PANTHER BOULE-RELATED 36 353 IPR037366 GO:0003729
Apr2g2422 355 Gene3D - 127 268 IPR012677 -
Apr2g2422 355 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 36 353 - -
Apr2g2422 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Apr2g2422 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 200 IPR000504 GO:0003723
Apr2g2422 355 SUPERFAMILY RNA-binding domain, RBD 35 122 IPR035979 GO:0003676
Apr2g2422 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Apr2g2422 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2422 Apr-Chr2 28802223 28804986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2422 37 221 Eukaryotic Initiation Factors Gene Family AT1G71770 27.919 7.28e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2422 K12741 - gmx:100818080 509.605