Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2405 ATGGAAGCTGCTCCTGCGCGAAGTCGCTCTGTGGAAGACATATTTGAGGATTTCAAGGGCCGAAGAACTGCAATCATCAAAGCCCTTACCACCGATGTTGAAGATTTCTACAGTCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAATGAGCAGTGGGAAGTAAATTTACCTGTCGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGTATAAACTTTGCTAGGGATGGGATGCAGGAAAAAGACTGGTTATCTTTAGTTTCTGTTCACAGTGATACATGGTTACTTGCCCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAACTGACAGGAAACGACTATTCAATATGATCAATGAACTACCAACAATATTTGAAGTTGTTACTGGTTCAGCGAAGAAACAAGTTAAAGAAAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTTCAGCTCTAAAGTGGTAAATTTTCTCAGCACACCAATAGCATTGCAAACGAAAGATGAGGATGAAGGACTAGAAGAGCAAGATGACGATGAACATGGAGAGACCTTGTGTGGCGCTTGTGGTGAGAACTATGGTACTGATGAGTTTTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTCGGGCAGAGCATATCAAGCAATACAAGTGCCCGACATGCAGTAACAAGAGAGCTCGCTAA 747 0.4297 MEAAPARSRSVEDIFEDFKGRRTAIIKALTTDVEDFYSQCDPEKENLCLYGLPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVSVHSDTWLLALAFYFGARFGFDKTDRKRLFNMINELPTIFEVVTGSAKKQVKEKSSVSNNSGSKSKFSSKVVNFLSTPIALQTKDEDEGLEEQDDDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPTCSNKRAR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2405 248 PANTHER CPG BINDING PROTEIN 6 248 IPR045104 GO:0006355|GO:0042393
Apr2g2405 248 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Apr2g2405 248 Pfam PHD-finger 196 245 IPR019787 -
Apr2g2405 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Apr2g2405 248 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 248 - -
Apr2g2405 248 SMART PHD_3 195 243 IPR001965 -
Apr2g2405 248 CDD PHD_AL_plant 195 245 IPR044104 -
Apr2g2405 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Apr2g2405 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Apr2g2405 248 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2405 Apr-Chr2 28685221 28690535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2405 3 248 Alfin-like Transcription Factor Family AT3G42790 72.470 1.03e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr2g2405 Alfin 1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2405 - - gmx:100777146 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2405 2 28685221 28690535 Apr10g1045 10 22828526 22832792 ECH
Apr9g2485 9 32144766 32148953 Apr2g2405 2 28685221 28690535 ECH
Apr2g2405 2 28685221 28690535 Apr2g2405 2 28685221 28690535 ECH
Apr2g2405 2 28685221 28690535 Apr2g2405 2 28685221 28690535 PCT