Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2398 ATGGAATACCCTTTTTCCCCTAATGAAAGAGAGATGGGGTATTGCCAATCTTCTCGAGCTCAATTTGAGGCATCAACGCCATTAGATGGTGGAATGAGCAATTCAATATCAGAGGATATACCAAATAGCTTATCTGAGTTCATGAACTTTGATACTTATGCTGGTTTGTGCAATAGCTCATCCATAAATGATCAGATTTTGGCTAATGAGCTTCCATCATTAGGCTCGATACCATATTCGTCGCCTTGTGGGTTCAATCTAGTCCAACAGAACAGTGGGCAATGCTATAATTTGTCAGGAGTTGGCAAAAGTTACAATGATACGGAAATTACCCCCACTTATCGGGAGCAAGTTGTGTGTCAACAAATGGATACCACACTTGGTTTCTTAGATGACACAATTGATGCAAATAACTTGAATTTCAAGTTAAAAAATAATGGCTCTTCTCAACATGTTAATACATTTGATACGAGTAATTGTACTATGTCCAAGCCACCTGGTTTGTCACTTGATGAGAGAATGTTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCAGGTGGGGGAATATTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATCAAATCATCTTAAGCACGAGTGAGCAACCTTACTTGCTAGATCAAATGCTTGCAGGGTACCGTGAAGTGTCAAGGACATTTACATTCTCTGCGGAAGGAAAATTGGGTTGTTTCCTAGGACTTCCTGGTCGTGTGTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACAGCATGAGTGAATACTTGAGGGTTGAACATGCAATTAATCACAAGGTTCGGGGATCAATTGCTTTTCCAGTATTCGATCTATACTCTGATCTGCCATGTTGTGCTGTTCTGGAACTTGTGACTACAAAGGAAAAGCCAGATTTTGACAGAGAATTGGAAATTGTTTGTCATGCACTTCAGCTTGTGAATTTAAGGACTACTAAGCCTCTTCGACTTCTTCCGCAGTGTTTTTCGGACAACAAAAGAGCTGCTTTGATCGAGATAGTTGATGTGTTACGATCTATCTGTCATGCACATAGATTGCCTCTTGCATTGACATGGATTCCTTGTTGTTACACTGAGGGCTCAAAAGGTGAAGCTACAAGGATACAAATTAAAGAGGGTCATTCAAGTTCTAATGAAAAAAGCATCCTATGTATTGAAGAATCAGCTTGCTATATTACTGATATAGCCATGGGAGGCTTTGTTCGTGCATGCATTTTACATCATCTTGAGGAAGGGAAAGGCATAGCTGGGAAAGCTCTTCAATCGAATAATCCTTTCTTCTATCATGATGTGAAGACGTATGATATTAGTGAATATCCACTTGTCCACCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGTTAAGGAGTACTTATACTGATGATGATGATTACGTATTGGAATTATTTTTGCCTGCCAATATCAAAGGGAGTTCAGAGCAACAACTTTTATTAGACAACCTCTCAAGTACCATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATACCGAATTATCAGGAATACAAAGATCTCAAGAGGGGTTTAAAGAGAAAAATGTCCCCAATTTTTTCCGTCTGCCAATGAAAAACTCTCAAATACCATTAAAAAATGGTGACCAGGATTATGTCCAAAAGACGTCATTGAAGGCGACCAACCTAAGAAACAACGGAATTGAGCCTTCTCATAACCGGGAAACAAATGGATCAAAAAGGAAAGTTGAGAAAAATAGAAGTACATCAGAGAAGAATGTTAGCTTGAATGTTCTCCAACACTACTTTTCTGGTAGTTTGAAGGATGCTGCAAAAAGCATCGGTGTTTGTCCGACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCGAGATGGCCATCTCGTAAGATCAATAAAGTGAATCGATCATTGAGGAAAATACAAATTGTGCTTGACTCTGTCCAGGGAGTGGAAGGAGGATTGAAGTTTGATCCCTCTCTGGGGGCATTTGTGGCAAGAGGGTCAATCATCCAGGAAACTGATGCACAAAAAAGTCTTATGTTTCCTGAGAAGAGTACTATAGAAGACCTTATAGCTGTTACACATGATGCAGATTCAGATTCAGTACCACCTACATCATGTAGTGAAGTGGAGAATTTTCCAATTAAGTTGGAGGAAAATTTGAATAAAATTAATGCCTTTTCGGTTGATTGCAATGAAGATTCAAAATCAATGGCAATGGATGATGTGTCATGCCAGACAGCGAGCCTTTGGAACAAGGCACAGGATTGTCCTGAACATGGTTGTTTCAGTTCTGTTCTTGGAAAGGAAAGGGATAAAAGGAGTATAAACAAGAGTGGTTTGAGAGTAGACAAATTTAAAAGCAATATTATAGGCCAGAGTTTAACCTCCTTGATTACTAATGACATGGACATTAATGTAGAAAGGGAAGATGGGGTTGTGAAGCCTAACCACCCTATTTCTTCAAGCTTGACAGATTCTTGTAATGGCTCTGGTTCAATGATGCATGGTAGTTCATCAGGTTCTCAAAGCTTTGAGAACCATAATCAATCCAAAGTCAAATCATTCATTGTTGATAGTGGGTCAAAAATAATTGCCAAAGCTACCTATAGAGGAGACACCATTCGTTTCAAGTTTGATCCATCTGCAGGTTGTTTCAGGCTATATGAAGAAGTTGCCACGAGATTCAAACTACAAAATGGGTCATTCCAACTTAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAGTGACTCTGATTTGCAAGAGTGTATAGAAATATTAGATGATATTGGTAAACATAGCGTGAGGTTTCTTGTTCGTGATATGCCTTGTGTTTTAACCAGTTATTGTAGTGGCAGTTGCTACTTGTGA 2937 0.3919 MEYPFSPNEREMGYCQSSRAQFEASTPLDGGMSNSISEDIPNSLSEFMNFDTYAGLCNSSSINDQILANELPSLGSIPYSSPCGFNLVQQNSGQCYNLSGVGKSYNDTEITPTYREQVVCQQMDTTLGFLDDTIDANNLNFKLKNNGSSQHVNTFDTSNCTMSKPPGLSLDERMLRALSFFKESAGGGILAQVWVPIKHGDQIILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKLGCFLGLPGRVFISKVPEWTSNVGYYSMSEYLRVEHAINHKVRGSIAFPVFDLYSDLPCCAVLELVTTKEKPDFDRELEIVCHALQLVNLRTTKPLRLLPQCFSDNKRAALIEIVDVLRSICHAHRLPLALTWIPCCYTEGSKGEATRIQIKEGHSSSNEKSILCIEESACYITDIAMGGFVRACILHHLEEGKGIAGKALQSNNPFFYHDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTDDDDYVLELFLPANIKGSSEQQLLLDNLSSTMQRICRSLRTVSDTELSGIQRSQEGFKEKNVPNFFRLPMKNSQIPLKNGDQDYVQKTSLKATNLRNNGIEPSHNRETNGSKRKVEKNRSTSEKNVSLNVLQHYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRKIQIVLDSVQGVEGGLKFDPSLGAFVARGSIIQETDAQKSLMFPEKSTIEDLIAVTHDADSDSVPPTSCSEVENFPIKLEENLNKINAFSVDCNEDSKSMAMDDVSCQTASLWNKAQDCPEHGCFSSVLGKERDKRSINKSGLRVDKFKSNIIGQSLTSLITNDMDINVEREDGVVKPNHPISSSLTDSCNGSGSMMHGSSSGSQSFENHNQSKVKSFIVDSGSKIIAKATYRGDTIRFKFDPSAGCFRLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVSDSDLQECIEILDDIGKHSVRFLVRDMPCVLTSYCSGSCYL* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2398 978 MobiDBLite consensus disorder prediction 585 600 - -
Apr2g2398 978 MobiDBLite consensus disorder prediction 571 602 - -
Apr2g2398 978 ProSiteProfiles PB1 domain profile. 882 964 IPR000270 GO:0005515
Apr2g2398 978 Gene3D - 879 963 - -
Apr2g2398 978 SUPERFAMILY CAD & PB1 domains 878 966 - -
Apr2g2398 978 ProSiteProfiles RWP-RK domain profile. 585 672 IPR003035 -
Apr2g2398 978 Pfam RWP-RK domain 604 652 IPR003035 -
Apr2g2398 978 Pfam PB1 domain 886 963 IPR000270 GO:0005515
Apr2g2398 978 PANTHER PROTEIN NLP8 5 739 IPR045012 GO:0003700
Apr2g2398 978 PANTHER PROTEIN NLP8 739 975 IPR045012 GO:0003700
Apr2g2398 978 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 739 - -
Apr2g2398 978 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 739 975 - -
Apr2g2398 978 CDD PB1_NLP 886 963 IPR034891 -
Apr2g2398 978 SMART PB1_new 882 964 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2398 Apr-Chr2 28644126 28649143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2398 1 978 NLP Transcription Factor Family AT2G43500 48.036 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Apr2g2398 PB1 3e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2398 - - gmx:100804426 1454.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2398 2 28644126 28649143 Apr2g2398 2 28644126 28649143 ECH
Apr2g2398 2 28644126 28649143 Apr5g0237 5 2139523 2146457 PCT