Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2388 ATGCCGCTTCCTTCCAAATCCCTCGAAAGCGAGGAGTGGGGAACACCCACCAACAACCTATGGGTCGGCAATTTGCCGCCGGAGGTCACCGACTCCGATATTATGGAGCTCTTCGCTCCATTCGGCGCTCTCGATACTCTCATCTCCTATTCCTCTCGCACTTTTGCCTTCGTCTTCTTAAGGCGACTCGAAGATGCCAAGGCCGCCAAAACCACTTTGCAGGGCGCTTTTCTGCGCGGAATTCACATCAGAATCGAATTCGCTAGACCGCCAAAGCCGTGTAAACAGCTATGGGTGGGTGGTGTTAGCCCTTCTATCACGAAGGAAGAATTGGAAACTGAATTTCGTAGATTTGGTAAGATTGAGGATTTTAAGCTCTTCAGAGACCGCAACACTGCATGCGTTGAGTTTCTCAACTTGGATGATGCTACTCGGGCCGTGAAAATCATGAACGGGAAGCGTTTGGGTGGAGACCAAATTTGTGTAGACTTCCTTCGATCACAATCTACTAAAAGAGATCTTTTGGTGGATTATGGGCAGTTTCAGGCTAGACCACAGCATTCACAACCTCCAATCGGGAGAAATGGTCAACCCAGTAATGTTTTGTGGATAGGTTTTCCTCCTTCTTTTCAGATTGATGAACAAATGCTTCACAATGCTATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAGTTCAGAAGCGTTGATGAAGCTCGGCGTGCGAAAGAGGGTCTTCAAGGACGGCTTTTTAATGATCCTCGGATAACGATTATGTATTCAAGCAGTGAGATGGCACCTGGCAAAGATTATCCTGGCATTTATCCTGGGAGTAAAGGGACTATATCTGATGGATTAGTTAACGAGCATCCACTTCGACCACTACAAATTGATGCATTTGGTCATAATCGTCCTATTGTTCCAAATAATTTTCCTGGACAACTGCCACCAGGGGGTGTTGTTGGACCCAATGCCCCAATGCGATCTTTTGGTTCTCAAGGTCTTGAACCTCTTATCTCTGGTCCTGAGTTTAATGAGATGGGTACACACACCAAATTTCAGGATGGTAGCTCTAAAAGTCTTACGGGTCCAAACTGGAAAAGGCCATCTCCACCTGCCTCAGGAATGCTTCCATCTCCTATGCCTGGTATTCAGCCGCCTTCAAGATCCACCTCTGGTGCATGGGATGTACTTGACATAAACCAAGTTCAGAGAGATTCTAAACGCTCAAGGATAGATGGTGCTTTGCACATTGGTGATACTCCATTTCCTTTAAGGAATATAGATGACCGTGGATTAGGGCTTGAACAAACTTTTGCAATTGATCCAGTTATTGATGGAGTTGGTTCTGGTCCTAAGAGTCACCTTGGTGCAGTGGGCAGTAGAATCACCTCTGGAGTGCCTGGTTCTGTTCAGCCAGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGAGCTAGATGCGTGCCTATTGGAAAAGGGATAGGGACTGATCTTCCTGATGTTGTTGATTGCGCTGCTAGGACAGGATTGGACATGCTAACAAAACACTATGCTGATGCAATCGGCTTTGATGTTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGCTACCTCAAAGCAAAAAACCGTGCTGGTGTTGCCAAGTTTGTTGATAACACCACTTTATTTTTGGTACCACCTTCAGATTTCTTGACCAATGTTTTGAAAGTCACTGGACCTGAACGTTTATATGGCGTGGTTCTGAAATTTCCTTCAGTTCCAAGTAGCACTCCAATGCAACAAGCAATGCATTTGCCTTCACCCTCTACCCAGTATATGCAGCAGATTCCCCCTTCACAAGCTGACTATGGTTCAATCTCTGTAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGATACATGAGGATTCTAAGCTTCTTCCAAAACCACTTCATCCAGCTACAAATGGCCCCTCTTCAATTCATTCTGTTCCTCCTGATTATACTCCTACAAAAACTGTCTCTGCATCCCAAACTGGAGTTACATTAACACCTGAACTTATTGCAACCTTAACTTCTTTACTCCCAGCAACCACGCAATCATCTGCCACTGACGGTGCAAAGACAGCAGTTGGTCCCTCTGCTGTGAAGCCACCATTTCCTCCTGGTGCACCTAATGATGGAAATCAATCTCATTTGTGGAAACAGGATCATCATATTGCAGATCCACCTAATCATCCCCCTCAACAGTTTGGGAGTATGTATAACATTCCCAATGCTCAATATCAGCCCTATCCACCTGCATTTACTCCTGACCACTCTGCTCAAGTGGTTTATGGCGGTTCTCATTTCCAAGATTCTGGTTCCAGTTTGCAACAACTAGGTACTGTTTCATCTACGCCCATGAACAATTTCATCATACCTCCACAAAATGGACAGGTAGCTGCATCCCCTCAAGTCAGTCAGCCATATCAGGTTGAAGTCTCCCACAACACCCAGAAAGGCTTTGGAATGGTTCAGGGAACAGATGCCTCTGTTTTATCTAGTTCTAAGGCATTCCAACAACCTAATTTTATACCCTCATCTAATCAAATTTCCAGTGCTGCTTCACAGCAACAAAATTTGACACCCTATCCAGTAGACAATGTTAACACAGAGCCTCCAAATCAGCAACTTCAACCTGCTTTATTTGGGGTTGGCCAGGCCATGTCAGAATTGGAAGCTGATAAGAACCAGAGATACCAGTCAACACTACAGTTTGCTGCCAACCTTCTCTTTCAGATACAACAACAACAAACACAAGGAGGGCATGGGCCAGGAAATCATCAATAA 2895 0.4449 MPLPSKSLESEEWGTPTNNLWVGNLPPEVTDSDIMELFAPFGALDTLISYSSRTFAFVFLRRLEDAKAAKTTLQGAFLRGIHIRIEFARPPKPCKQLWVGGVSPSITKEELETEFRRFGKIEDFKLFRDRNTACVEFLNLDDATRAVKIMNGKRLGGDQICVDFLRSQSTKRDLLVDYGQFQARPQHSQPPIGRNGQPSNVLWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSEMAPGKDYPGIYPGSKGTISDGLVNEHPLRPLQIDAFGHNRPIVPNNFPGQLPPGGVVGPNAPMRSFGSQGLEPLISGPEFNEMGTHTKFQDGSSKSLTGPNWKRPSPPASGMLPSPMPGIQPPSRSTSGAWDVLDINQVQRDSKRSRIDGALHIGDTPFPLRNIDDRGLGLEQTFAIDPVIDGVGSGPKSHLGAVGSRITSGVPGSVQPDIDHIWRGIIAKGGTPVCRARCVPIGKGIGTDLPDVVDCAARTGLDMLTKHYADAIGFDVVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFVDNTTLFLVPPSDFLTNVLKVTGPERLYGVVLKFPSVPSSTPMQQAMHLPSPSTQYMQQIPPSQADYGSISVKEEQVLPMDYNRLIHEDSKLLPKPLHPATNGPSSIHSVPPDYTPTKTVSASQTGVTLTPELIATLTSLLPATTQSSATDGAKTAVGPSAVKPPFPPGAPNDGNQSHLWKQDHHIADPPNHPPQQFGSMYNIPNAQYQPYPPAFTPDHSAQVVYGGSHFQDSGSSLQQLGTVSSTPMNNFIIPPQNGQVAASPQVSQPYQVEVSHNTQKGFGMVQGTDASVLSSSKAFQQPNFIPSSNQISSAASQQQNLTPYPVDNVNTEPPNQQLQPALFGVGQAMSELEADKNQRYQSTLQFAANLLFQIQQQQTQGGHGPGNHQ* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2388 964 Pfam SPOC domain 483 600 IPR012921 -
Apr2g2388 964 MobiDBLite consensus disorder prediction 677 694 - -
Apr2g2388 964 MobiDBLite consensus disorder prediction 360 377 - -
Apr2g2388 964 MobiDBLite consensus disorder prediction 721 794 - -
Apr2g2388 964 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 8 964 - -
Apr2g2388 964 Gene3D - 5 91 IPR012677 -
Apr2g2388 964 SMART rrm1_1 201 269 IPR000504 GO:0003723
Apr2g2388 964 SMART rrm1_1 19 86 IPR000504 GO:0003723
Apr2g2388 964 SMART rrm1_1 96 163 IPR000504 GO:0003723
Apr2g2388 964 CDD RRM3_Spen 97 166 - -
Apr2g2388 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 80 IPR000504 GO:0003723
Apr2g2388 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Apr2g2388 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 160 IPR000504 GO:0003723
Apr2g2388 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Apr2g2388 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 964 - -
Apr2g2388 964 MobiDBLite consensus disorder prediction 879 910 - -
Apr2g2388 964 SUPERFAMILY RNA-binding domain, RBD 184 273 IPR035979 GO:0003676
Apr2g2388 964 Gene3D - 92 190 IPR012677 -
Apr2g2388 964 MobiDBLite consensus disorder prediction 381 395 - -
Apr2g2388 964 MobiDBLite consensus disorder prediction 358 403 - -
Apr2g2388 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Apr2g2388 964 CDD RRM3_Spen 20 89 - -
Apr2g2388 964 MobiDBLite consensus disorder prediction 675 694 - -
Apr2g2388 964 Gene3D - 193 278 IPR012677 -
Apr2g2388 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Apr2g2388 964 SUPERFAMILY RNA-binding domain, RBD 16 170 IPR035979 GO:0003676
Apr2g2388 964 CDD RRM3_Spen 202 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2388 Apr-Chr2 28563797 28573857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2388 19 262 Eukaryotic Initiation Factors Gene Family AT2G36660 24.812 1.32e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2388 - - gmx:100806555 1507.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2388 2 28563797 28573857 Apr2g2388 2 28563797 28573857 ECH
Apr2g2388 2 28563797 28573857 Apr5g0228 5 2064255 2077128 PCT