Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2383 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCGGCAACAGTGATTTGTTGTGCGGACGAGGCTGCTTTGTGTGCCAAATGTGACGTAGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATGTCTATCAAACAAGTTTCCAAAATGTGACATTTGCCAAGATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATTCAGCTGGAAGCCTTTCTGCTAACCACCAGCGCTTCCTTGCAACTGGTATCCAAGTGGCCTTGAATTCTACTTGCACCAGGGACAATGAAAAAAGTCAACTGGAGCCTCCTAATAGGAACGCACAAGTTTCCACAAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTATTGGAATTAACAGGCTTTGAATCACCTGAGAAAAAGGAGCCCCTGCAGTTTGGAGAGCTGGAATGGCTGCCAGATGTTGGTCTTTTCAGTGAACAATTTACTCCGGAAGCCCTATCAGCAGCTGAAGTCCCTCAGCTTCCAGTAACTCATAATAGCAGCAATATTGCCTCGTACAGAACCTCCAAGTCCTACATTTCCTACAAAAAGCCAAGGATTGAAGTCCTAAATGATGATGATGATGATGAGTACTTTACTGTGCCTGATCTTGGCTAA 720 0.4431 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKFPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIQVALNSTCTRDNEKSQLEPPNRNAQVSTKVPSQQVPSFTSSWAVDDLLELTGFESPEKKEPLQFGELEWLPDVGLFSEQFTPEALSAAEVPQLPVTHNSSNIASYRTSKSYISYKKPRIEVLNDDDDDEYFTVPDLG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2383 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Apr2g2383 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Apr2g2383 239 MobiDBLite consensus disorder prediction 113 132 - -
Apr2g2383 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Apr2g2383 239 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 239 - -
Apr2g2383 239 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Apr2g2383 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Apr2g2383 239 Gene3D Classic Zinc Finger 1 92 - -
Apr2g2383 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Apr2g2383 239 CDD Bbox1_BBX-like 5 47 - -
Apr2g2383 239 CDD Bbox1_BBX-like 56 98 - -
Apr2g2383 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2383 Apr-Chr2 28535034 28539399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2383 1 160 Orphan Transcription Factor Family AT1G06040 64.497 1.31e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Apr2g2383 zf-B_box 7.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2383 - - vun:114183169 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2383 2 28535034 28539399 Apr2g2383 2 28535034 28539399 ECH
Apr2g2383 2 28535034 28539399 Apr5g0223 5 2033453 2036479 PCT