Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2352 ATGGAGTCAGATCTTCAGCAACAGCCGCAGGTAAATTCTTCAGGTTTGACGCGATACCGATCGGCGCCGAGTTCGTATTTCACCAACATCATTGACCGTGAGTTCTACGAGCACATTTTCAATCGACCTTCTAGCCCCGAAACAGAGCGAGTTTTCTCACGCTTCATGAACAGTTTAAGCGGTGAAGGTGCAGCAGAGGAAGCACTCGATCAAAAACTCTCTACTGATTCTGCAGTTAAGGAAGAGATTAACCAGCAGCAGGAACAGGTCATCAGCGATGAACACGTGGTTCTCCAGCAGAGTAATAGTATTGATAATTATAACTCTGCTTCTCAGACTTTTTATCAAAGCTCAGCAAGACCACCTTTGCCAAATCAAAACGCGTTTTCAATGGAAGTTAATCGGTTGCCGCAGACGCAGATGAAGACCGGTGGTGGAAATCATTCCAATCTTATCAGACATAGTAGCTCACCAGCAGGACTATTTTCCCAAATTAACATTGAAAATGGCTATGATGTTATAAGAGGCATGGGAACTTTAGGGGCTGTTAATAACTCTATCGAAGAAGCGAAATTTTCTACTGCAAAGAGGTTGAAGAATCCGCAAAACTACTCGTCAGGGCGAATGTCATCAATAGCTGAAATTGGGGATAAAGTCAATAGAGAGAATAATCCAGACAGTGAAGCTTTTGCTGAAAGCCACGGTAACGATTTTATCACAGGTTTCCAAGTTGGTCCTTGGGATGATTCTGCATTGATATCTGACAATGTTAGTGGTCTAAAAAGATTTAGAGAAAACGATGCAAAACCATTTTCTGGTTTAAATGCAGCTGAGACTCAGAATGAAACTGGAGGACAGTCTCCTACTCCTTTGGCCCATCACTTGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAAAAGTTTCTGCAGTTCTCAGATTCTGTCCCATGCAAAATTCGTGCCAAACGGGGCTGTGCCACTCATCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTGGTCCCAAACATGGACAAGCAAACTAACACAGCAGACATGTTGGATTTGGCCGTTGATTACATCAAAGATCTTCAAAAGCAAGTTCAGATTGTCACTCTAAGTGTACGTGTTCAAAAGAGCAGCAACAATAACGGCAAAGAAGACCAACTTAATATATGGTGCGAGTGTGCCACTTCTTCAACGGTTGCGGAGGTGGGGGAGAAAAATCGCTTATAA 1275 0.429 MESDLQQQPQVNSSGLTRYRSAPSSYFTNIIDREFYEHIFNRPSSPETERVFSRFMNSLSGEGAAEEALDQKLSTDSAVKEEINQQQEQVISDEHVVLQQSNSIDNYNSASQTFYQSSARPPLPNQNAFSMEVNRLPQTQMKTGGGNHSNLIRHSSSPAGLFSQINIENGYDVIRGMGTLGAVNNSIEEAKFSTAKRLKNPQNYSSGRMSSIAEIGDKVNRENNPDSEAFAESHGNDFITGFQVGPWDDSALISDNVSGLKRFRENDAKPFSGLNAAETQNETGGQSPTPLAHHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQIVTLSVRVQKSSNNNGKEDQLNIWCECATSSTVAEVGEKNRL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2352 424 Pfam Helix-loop-helix DNA-binding domain 332 378 IPR011598 GO:0046983
Apr2g2352 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 388 IPR036638 GO:0046983
Apr2g2352 424 SMART finulus 333 383 IPR011598 GO:0046983
Apr2g2352 424 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 383 - -
Apr2g2352 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 377 IPR011598 GO:0046983
Apr2g2352 424 Gene3D - 328 401 IPR036638 GO:0046983
Apr2g2352 424 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2352 Apr-Chr2 28331348 28334497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2352 1 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.329 2.18e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g2352 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2352 - - gmx:100805812 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2352 2 28331348 28334497 Apr2g2352 2 28331348 28334497 ECH
Apr4g1179 4 10210833 10214980 Apr2g2352 2 28331348 28334497 ECH
Apr8g0783 8 7920221 7924048 Apr2g2352 2 28331348 28334497 ECH