Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2351 ATGGATTCTTCTGTTGTTGTGGGTAGTGCAATTTCGGAGCCTCGTAATGATATGGAATTTGAATCTCATGAAGCTGCGTATATATTTTACAAAGAATATGCTAAGTCTGCAGGGTTTGGCACTGCTAAGTTGAGCAGTCGGCGATCTAGGGCATCGAAAGAATTTATCGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGCCCTTCTCCTAAAATTGGTTGTAAAGCAAGCATGCATGTGAAGAGAAGGCAGGATGGTAAATGGTATGTGTATAGCTTTGTGAAGGAACATAATCATGAGCTGTTACCTGCTCAGGCTCATTTTTTCCGGAGTCACAGGAGTTCTGATCCACTAAGTAATGATGTTCGGATGAGAAGGCGGAAGAACACAAATGCAGTTTCTAAATTATTTACTGCTTATCAAACTGTTGATTGCTTAGAGAACTTCATGAAACATCAACATGATAAGGGACGAAGCTTGGCTTTAGAAGCAGGGCATGCCCAGTTGCTTCTTGAACTCTTCATGCACATGCAAGAAGTGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAGCATCGACTGAGAAATGTGTTCTGGGTTGATGCTAAAGGCTTGGAAGATTTTGCTTACTTTGCTGATGTTGTTTCTTTAGACACAACATATTTTGCAAGCAAGTATAAATTACCACTGGTACTTTTCATTGGAGTAAACCATCACATTCAACCAACATTGCTTGGTTGTGCATTGATTGCTGATGAAACAATATATACTTTTGCCTGGTTACTGCAAACATGGTTAATAGCAATGGGGGAACGAGCTCCACAAGTGATTCTTACTGACCAAAATGAGGCTGTTAAAGCAGCTGTTGCTGCTTTTCTTCCAGGAACACGTCATTGTTTTTGTTTGTGGCATATTTTGGAAAAGATACCAAAACAACTAGAGTTTTTAGGCACATGGCATGACAGATTTTTGGAAAAATTTAACAAATGTATATACAAATCATGGACAGAGGAGCAATTTGAAAAGAGGTGGTGGAAGTTGGTTGACAGGTTTAAACTTAGGGATGTTGAGTGGGTCCAATCCTTGTATAATGACCGTACATATTGGGTGCCAACTTTTATGAAAGATATTTCTTTTGCTGGCTTGTCTTCTAGTTCACGCTCAGAAAGTTTAAATTCATTGTTTGACAACTATGTTCATGTTGATACTTCATTGAGAGAATTTATAGAACAGTATTGGGTGATTCTTGAAGATAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGTTATTAGTTTACACGCATGAAATTTTTAAAAAGTTCCAGGTTGAGGTATTGGGTGCAGCTGCTTGCCATCTTAAAAAAGAAAATGATGGTGTGACTACTACTTATACCGTGAAAGACTTTGAAAATAATCAAAGCTATGCAGTAGAATGGAACACATCAAGCTCAGATATATGTTGTTCATGTCACTTGTTTGAATATAAAGGTTATCTTTGTAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTATTCAGCATTCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGCCATGAGCAGGCATCCTATTGGTGAAAAATTAGAAGATGTTCAATCCAAGGTCCGGCGATTCAATGATTTATGTAGGCGAGCCATAATATTAGGTGAAGAAGGTTCTTTGTCACAAGAAAGTTACTATATTGCTTTAGGTGCTATCAGTGAAGCACTAAAGCAATGTGCAAATTTGAACAACCCTGTTGATAATGGTATGAGACCTGATGCCTCAGGTACCCATCTTGTTTGTCGTGTTGAAGAAGAGTATCAATCTGTTGTTGCATCTAACAATAAGGTCTCTGATCCAAAAATGAATACGGGAAAGAAGACCATGAGGACTGGTGTGACTGCTAGGGGTCTAGGAAGTGTTGAAAATAGTGAAGGAAATAAGGGAAAGGTATCACAGCTAGAAGCAGTGAGCGGGAAAGATGGTTTTCAACCAATGGAGCATACTGATCTGAGGTCGCATGGTGTCTTGCCAATGCAGTTTCACAGTATGGTACCGGTTCTTTTCCATAATGTTTCATCCCCGTTTCACACTGCACCCGCAACTCACTTGCATGACAATCGTCTTCCTCGTTAG 2241 0.3887 MDSSVVVGSAISEPRNDMEFESHEAAYIFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLSNDVRMRRRKNTNAVSKLFTAYQTVDCLENFMKHQHDKGRSLALEAGHAQLLLELFMHMQEVNPKFFYAVDLNEEHRLRNVFWVDAKGLEDFAYFADVVSLDTTYFASKYKLPLVLFIGVNHHIQPTLLGCALIADETIYTFAWLLQTWLIAMGERAPQVILTDQNEAVKAAVAAFLPGTRHCFCLWHILEKIPKQLEFLGTWHDRFLEKFNKCIYKSWTEEQFEKRWWKLVDRFKLRDVEWVQSLYNDRTYWVPTFMKDISFAGLSSSSRSESLNSLFDNYVHVDTSLREFIEQYWVILEDRHEEEAKANFDAWHETPELKSPSPFEKQMLLVYTHEIFKKFQVEVLGAAACHLKKENDGVTTTYTVKDFENNQSYAVEWNTSSSDICCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILQRWTNAAMSRHPIGEKLEDVQSKVRRFNDLCRRAIILGEEGSLSQESYYIALGAISEALKQCANLNNPVDNGMRPDASGTHLVCRVEEEYQSVVASNNKVSDPKMNTGKKTMRTGVTARGLGSVENSEGNKGKVSQLEAVSGKDGFQPMEHTDLRSHGVLPMQFHSMVPVLFHNVSSPFHTAPATHLHDNRLPR* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2351 746 SMART 26again6 517 544 IPR006564 GO:0008270
Apr2g2351 746 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Apr2g2351 746 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Apr2g2351 746 Pfam MULE transposase domain 227 320 IPR018289 -
Apr2g2351 746 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 705 - -
Apr2g2351 746 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 705 IPR031052 GO:0006355
Apr2g2351 746 Pfam SWIM zinc finger 512 540 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2351 Apr-Chr2 28321323 28325340 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr2g2351 MULE 1.2e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2351 - - gmx:100805273 1378.62