Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2346 ATGGACCATGACAAGACTGGATGCCAAGCTCCCCCGGAAGCTCCTATATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCTGCTACTATGAACATGTGTTCTAAGTGCCATAAAGATATGATGCTGAAACAAGAGCAGGCAAAGCTTGCAGCATCGTCTATTGGGAATATTATGCATGGTTCATCGAGCAGCAGTGGAAATGAACCTGCCATTGCTACCAACGTGGATATCTCAGTCAATTCAATAGAGCCTAGAACTATCTCTGCACAACCTTTGGTTGCTTCAGGTGCAAAGGAGAGTGACGAGGCAAAGCCCAAGGATGGTCCGAAACGATGCAGCAACTGTAATAAGCGAGTTGGATTAACAGGATTTAATTGTCGATGTGGTAACCTTTTCTGTGCTGTACACCGCTACTCAGACAAACATAATTGCCCATTTGATTACCGCTCTGCTGCACGGGATGCCATAGCTAAAGCAAATCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATCTAG 519 0.4489 MDHDKTGCQAPPEAPILCINNCGFFGSAATMNMCSKCHKDMMLKQEQAKLAASSIGNIMHGSSSSSGNEPAIATNVDISVNSIEPRTISAQPLVASGAKESDEAKPKDGPKRCSNCNKRVGLTGFNCRCGNLFCAVHRYSDKHNCPFDYRSAARDAIAKANPVVKAEKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2346 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Apr2g2346 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Apr2g2346 172 Gene3D - 4 69 - -
Apr2g2346 172 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 172 - -
Apr2g2346 172 SUPERFAMILY AN1-like Zinc finger 97 167 IPR035896 -
Apr2g2346 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Apr2g2346 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Apr2g2346 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Apr2g2346 172 Gene3D - 89 168 IPR035896 -
Apr2g2346 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Apr2g2346 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Apr2g2346 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2346 Apr-Chr2 28286928 28289303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2346 8 172 C2H2 Transcription Factor Family AT3G52800 43.353 8.23e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2346 - - gmx:100781607 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2346 2 28286928 28289303 Apr2g2346 2 28286928 28289303 ECH
Apr4g1186 4 10332542 10334618 Apr2g2346 2 28286928 28289303 ECH
Apr8g0793 8 8102371 8104182 Apr2g2346 2 28286928 28289303 ECH