Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2342 ATGACTCATCCCTACTGCTCCAATGACTTCAATGCTTGGTTTGACCTCAATTCTCCATGTCTCATCTCTTCTTCTTCATCATCACCTTGCTCCAGCCCACCATTTTATCTCCCTTCTAGTTATCATCATAACTGCACAAGTGATATCTCTTTCTCTCAGCATCAATCTTCTCCTCCCTCTCCTCCTCTAAAAGAAGCCCTTCCTCTCCTTAACTTAAGCCCAGAAAAAGGTGAAGATCTTGAATCTTCCTTCAGTGCCATGAAAGTGAACAAGGAGAAAGAGAGAGAACTAAGCATATCATCTAACCGGTCTTTGAATGATGATACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCACAACTTCAGCTGATTTAACTTCAAACGTATACTCCACGGAGATTTCAGACAAAGAGAAAGTCACGGTTGCTTCTGAGTATTCACCAACGACAATTAACAGGGGTCAGTATTGGATCCCTACCCCAGCTCAGATTCTGATTGGTCCAACACAGTTTTCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAATCGCTAAGGGGAACGCAACCAACAGCTATGCTTAGACTACCTTGCTATTGCTGTGCACCAGGGTGCAAGAACAACATTGATCATCCACGAGCAAAGCCACTCAAAGACTTTAGAACCCTTCAAACCCATTACAAGAGAAAGCACGGAATCAAGCCTTTCATGTGCAGAAAATGTTGCAAAGCATTTGCTGTGAGAGGTGATTGGAGAACTCACGAGAAGAACTGTGGGAAGCTTTGGTATTGCTCTTGTGGGTCCGATTTTAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCTTTTGGGAATGGACATAAAGCTTATGGAATCGACTGTCTTGATCAAGATGATGAAGCGGGCTCTGAAATTGAGCAAGAAAATGAATCTTTAATTTCAAGTCATAATTGA 1014 0.428 MTHPYCSNDFNAWFDLNSPCLISSSSSSPCSSPPFYLPSSYHHNCTSDISFSQHQSSPPSPPLKEALPLLNLSPEKGEDLESSFSAMKVNKEKERELSISSNRSLNDDTVTVALHLGLPSTTSADLTSNVYSTEISDKEKVTVASEYSPTTINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCLDQDDEAGSEIEQENESLISSHN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2342 337 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
Apr2g2342 337 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 331 - -
Apr2g2342 337 Gene3D Classic Zinc Finger 171 194 - -
Apr2g2342 337 SUPERFAMILY beta-beta-alpha zinc fingers 238 276 IPR036236 -
Apr2g2342 337 PANTHER ZINC FINGER PROTEIN WIP2 1 331 IPR043584 GO:0003700|GO:0010468
Apr2g2342 337 Gene3D Classic Zinc Finger 214 307 - -
Apr2g2342 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2342 Apr-Chr2 28251326 28253343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2342 1 327 C2H2 Transcription Factor Family AT1G51220 59.143 6.79e-133 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g2342 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2342 - - gmx:100789416 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2342 2 28251326 28253343 Apr2g2342 2 28251326 28253343 ECH
Apr4g1189 4 10378358 10380718 Apr2g2342 2 28251326 28253343 ECH
Apr8g0805 8 8233700 8235920 Apr2g2342 2 28251326 28253343 ECH