Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2334 ATGGCGATGACATATTCGGGCTATCATCAACCTTCGTCCATAGAAGAAGTTCGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAAACCTATCTCACTCACTGCTTCGCTCACACAGGTGAAGTCCTTTCAATCAAAATCATACGAAACAAGATAACGGGCCAGCCGGAGGGCTACGGTTTCGTCGAGTTTGTATCGCACGCCGCAGCAGAGAGGGTTCTCCAGAGTTATAACGGAACGCAAATGCCCGGAACAGAACAAAACTTCAGGCTTAATTGGGCCTCTTTTGGTATCGGTGAGCGTCGGGCCGATGCGGGTCCAGAACACTCCATCTTCGTCGGCGATCTTGCGCCCGATGTTACGGATTATCTGCTTCAGGAGACATTTCGGGCCCATTACCCTTCCGTTAGAGGTGCCAAGGTTGTGACGGATTCCAACACTGGTCGCTCCAAGGGTTATGGGTTCGTTAAGTTTTCTGATGAGAATGAGAGGAACCGCGCCATGACGGAAATGAACGGCGTTTATTGCTCCACCAGGCCCATGCGCATTAGTGCTGCTACGCCTAAGAAGACCACTGCTTTTCAGCAACCTTATGCTGTTCCTCCACCTAAGGAGGAGGAGCTGAAGCAAAACTTTCTGCTATTTGGAGAGGTTGTTTCTGTCAAAATTCAGGCTGGGAAAGGATGTGGTTTTGTTCAATTTGGGACCAGATCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGTCAACAAGTGATCCAAATTTCCTGGGGTAGGACCCCAACAGCTAGACAGGAACCTGGTGGCTGGGGACCACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGATGCCTATGCATATGGGGCTACTCATGATCCTTCATTGTATGCATACAGTGCATATGCTGGCTATGCACAATACCCCCAACAAGTTGAAGTTGCCCAAGATGTGTCAGCTATGCCTGTGCCTACCATAGAACAAAGGGAGTTGTATGATCCCTTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATACCTCTCAATACACGGAAGTGCCATTTTAGGGAGATCCCTCTGGCAAAAAACCTGTTCGTCTTCCTTACCACAAGCTTAG 1155 0.4874 MAMTYSGYHQPSSIEEVRTLWIGDLQYWVDETYLTHCFAHTGEVLSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQNFRLNWASFGIGERRADAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDSNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTAFQQPYAVPPPKEEELKQNFLLFGEVVSVKIQAGKGCGFVQFGTRSSAEEAIQKMQGKMIGQQVIQISWGRTPTARQEPGGWGPQMDPSQWSAYYGYGQGYDAYAYGATHDPSLYAYSAYAGYAQYPQQVEVAQDVSAMPVPTIEQRELYDPLAMPDVDKLNAAYLSIHGSAILGRSLWQKTCSSSLPQA* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2334 384 CDD RRM1_SECp43_like 19 99 - -
Apr2g2334 384 SMART rrm1_1 19 94 IPR000504 GO:0003723
Apr2g2334 384 SMART rrm1_1 112 186 IPR000504 GO:0003723
Apr2g2334 384 SMART rrm1_1 192 262 IPR000504 GO:0003723
Apr2g2334 384 Gene3D - 199 272 IPR012677 -
Apr2g2334 384 Gene3D - 17 97 IPR012677 -
Apr2g2334 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 178 IPR000504 GO:0003723
Apr2g2334 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 88 IPR000504 GO:0003723
Apr2g2334 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 259 IPR000504 GO:0003723
Apr2g2334 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 266 IPR000504 GO:0003723
Apr2g2334 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 190 IPR000504 GO:0003723
Apr2g2334 384 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 199 - -
Apr2g2334 384 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 206 323 - -
Apr2g2334 384 SUPERFAMILY RNA-binding domain, RBD 206 284 IPR035979 GO:0003676
Apr2g2334 384 SUPERFAMILY RNA-binding domain, RBD 17 191 IPR035979 GO:0003676
Apr2g2334 384 Gene3D - 110 187 IPR012677 -
Apr2g2334 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 98 IPR000504 GO:0003723
Apr2g2334 384 CDD RRM2_SECp43_like 110 189 - -
Apr2g2334 384 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 9 199 - -
Apr2g2334 384 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 206 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2334 Apr-Chr2 28184451 28187328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2334 109 274 Eukaryotic Initiation Factors Gene Family AT1G71770 30.168 2.21e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2334 - - cam:101496574 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2334 2 28184451 28187328 Apr2g2334 2 28184451 28187328 ECH
Apr2g2334 2 28184451 28187328 Apr3g1485 3 29467972 29469912 PCT