Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2332 ATGAGGAAGCCAGAGTTGTGCAGTACTAAAAACAACAACAATAGCAAACTTAGAAAGGGATTGTGGTCACCAGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAATGGACAAGGTTGTTGGAGCGATGTGGCAAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGCTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAAAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGCAACAGATGGTCTCAAATAGCAGCGCGCTTGCCTGGGCGAACTGACAATGAAATAAAAAACTTTTGGAATTCAACGATAAAGAAAAGACTTAAGAACATGTCGTCCACAACCACAACCTCAACCTCCCCAAATGCAAGCGAGTCCTCGTCAGAGCCTAGTAAAGACCTCAACATGGGAGGGTTTATTTCCACACAACATCATCATGATCATCATGCAAGCTTTGTGCCCATGTTTGGTTCATCTCCATCTTCAATGCCAACCACAGTTCTCGATTCCGTGATTGATAGGTTGCCTGTGCTGGAGTATGGACTTAACATGCCAGCTTCTGGAGGGTACTTCAAGGGCACAGGGAGCTTTTCACAAAGTGGAGTTGACAATAAAGGTTCTTTTTTAGAAAATGGAGTTTTTGGGAGTGTAAATATTGGAGTAGAAGGGGATATGTTTGTTCCTCCCCTTGAGAATGTTAGCACCTCTATTAATCATAACCAGAGAGTAATTGAGAGCACGTGCAAGAGAGAAACTAACGATTGTTACTTTGATGACATAAATAGTATGCTTAATAACTGCAACATTAACAACAATAATAAAGGAGCTGAAAATAAGGCTGGGATGGAGAGTTTGTTTCAAGAAGAGTTAACCATGGGAGAGTGGGACTTTGAGGAGTTGATGAAAGATGCTACCTCCTTTCCGTTTCTTGATTTTTCATTCTGA 984 0.4207 MRKPELCSTKNNNNSKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTTTSTSPNASESSSEPSKDLNMGGFISTQHHHDHHASFVPMFGSSPSSMPTTVLDSVIDRLPVLEYGLNMPASGGYFKGTGSFSQSGVDNKGSFLENGVFGSVNIGVEGDMFVPPLENVSTSINHNQRVIESTCKRETNDCYFDDINSMLNNCNINNNNKGAENKAGMESLFQEELTMGEWDFEELMKDATSFPFLDFSF* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2332 327 Gene3D - 73 147 - -
Apr2g2332 327 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Apr2g2332 327 PANTHER MYB TRANSCRIPTION FACTOR 7 326 - -
Apr2g2332 327 CDD SANT 22 66 IPR001005 -
Apr2g2332 327 MobiDBLite consensus disorder prediction 123 148 - -
Apr2g2332 327 Gene3D - 16 72 - -
Apr2g2332 327 MobiDBLite consensus disorder prediction 1 20 - -
Apr2g2332 327 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Apr2g2332 327 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Apr2g2332 327 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Apr2g2332 327 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Apr2g2332 327 SMART sant 18 68 IPR001005 -
Apr2g2332 327 SMART sant 71 119 IPR001005 -
Apr2g2332 327 CDD SANT 74 114 IPR001005 -
Apr2g2332 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Apr2g2332 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Apr2g2332 327 PANTHER MYB DOMAIN PROTEIN 55 7 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2332 Apr-Chr2 28167467 28170075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2332 1 325 MYB Transcription Factor Family AT3G08500 46.067 4.30e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g2332 Myb_DNA-binding 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2332 K09422 - gmx:100786151 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2332 2 28167467 28170075 Apr2g2332 2 28167467 28170075 ECH
Apr2g2332 2 28167467 28170075 Apr5g0177 5 1602105 1604614 PCT