Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2313 ATGAGCTCCGAGACCCCACGCGCTACGCCGTCGTATTGGTGCTATAGCTGCACCCGCTTTGTTCACCTCCTCGACCAAGACGACGTCCTCTGCCCCCACTGCCAAAGTGGCTTCGTCGAAGAGATCCACGCTGGTCAATCGCCCGCTCTCTCCCTCTTCGCTGATGGCTTTCACACTTCCCGGAGACACGGCTTCCGCCGGAGACGCCGCAACGCCGGCACCCGCTCGCCGTTTAACCCCGTCATCGTTCTCCGTGGACCGGGCGAGGACGAGGGGACCAGCTTCGAGTTATTCTACGACGACGGCGACGGCACCGGTCTCCGACCGCTGCCGCCAACTATGTCAGAGTTTTTGCTCGGATCCGGCTTCGATCGGTTGTTGGAGCAGTTTTCTCAGATCGAGATCAACGGGTTCGGGAGGGCGGAGAATCCGCCGGCGTCGAAGTCTGCGATAGAGTCAATGCCGACGATCGAGATCGCGGAGGCGCAGGTGGAGACGGAGACGCACTGCGCCGTTTGCAAAGAAGCCTTCGAGCTAGGTTCGGAGGCGCGCAAGATGCCTTGCAACCACCTTTACCATTCCGATTGCATTCTCCCATGGCTTTCGATGCGAAATTCGTGCCCTGTGTGCCGCCACGAGTTGCCGTCCGATCAAAACCCGGTGGAATCCAGAGTCGCTGGTCAGATCGAGGAAGAAGCCGTAGGGCTGACCATATGGAGGTTACCGGGCGGCGGATTCGCTGTCGGGCGGTTTGCCGGCGGGCGAAGAGCCAGCGATAGTCAGTTGCCGGTTGTGTACACGGAGATGGATGGTGGTAGCAATTCGAACGAAGGTTCGAGAAGAATCTCGCTGGCAGTGGGGAGCGGCAGAGTTAGGGAGAGCGGTGGATTTGGTAGAATTTTCCGCAATTTCTTTTCCTTCTTTGGGAGAATTGGGTCCCTTAATAGAACCCGAAGCCGAAGCTCTTCGTCTTCGTTGTTCAGTAGAAGAAGAAGCAGAACCTGGGTCTTGGAAGGTTGA 1020 0.5824 MSSETPRATPSYWCYSCTRFVHLLDQDDVLCPHCQSGFVEEIHAGQSPALSLFADGFHTSRRHGFRRRRRNAGTRSPFNPVIVLRGPGEDEGTSFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRAENPPASKSAIESMPTIEIAEAQVETETHCAVCKEAFELGSEARKMPCNHLYHSDCILPWLSMRNSCPVCRHELPSDQNPVESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGGRRASDSQLPVVYTEMDGGSNSNEGSRRISLAVGSGRVRESGGFGRIFRNFFSFFGRIGSLNRTRSRSSSSSLFSRRRSRTWVLEG* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2313 339 SMART ring_2 170 210 IPR001841 -
Apr2g2313 339 Pfam Ring finger domain 169 211 IPR001841 -
Apr2g2313 339 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Apr2g2313 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 217 IPR013083 -
Apr2g2313 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 296 - -
Apr2g2313 339 ProSiteProfiles Zinc finger RING-type profile. 170 211 IPR001841 -
Apr2g2313 339 PANTHER OS05G0110000 PROTEIN 9 296 - -
Apr2g2313 339 CDD RING-H2_RNF126_like 170 211 - -
Apr2g2313 339 SUPERFAMILY RING/U-box 150 217 - -
Apr2g2313 339 Pfam Protein of unknown function (DUF1117) 234 329 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2313 Apr-Chr2 28061724 28064419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2313 109 222 C3H Transcription Factor Family AT5G01980 45.614 5.80e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2313 - - aip:107612938 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2313 2 28061724 28064419 Apr2g2313 2 28061724 28064419 ECH
Apr2g2313 2 28061724 28064419 Apr3g0205 3 3749553 3751297 ECH
Apr4g1911 4 27101678 27102901 Apr2g2313 2 28061724 28064419 ECH
Apr2g2313 2 28061724 28064419 Apr3g0205 3 3749553 3751297 PCT