Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2307 ATGGATGACAGTGAGCTATCTGAATTATTTGATAAGGTACTATTAGGCACTGGGCTGGGAAAAGGAACACCTCCTAATATGACCTTTCAGGAAGGTGGTGGAAATGATAAGCAAGTTGTGGATCTGAGGACCCTATTGATGCTTTGTGCTCAAGCTAGTGCTTCTGATAATCTTTCATATGCTAATAAGTTACTAAAGCAGATTAGGCAGCATTCTTCAATAATAGGCGATGGAACTCAGCGGCTTGCACATTACTTTGGAAATGCCCTTGAAGCACGCTTGGCTGGCACAGGTTTGCATGTTTATAGTGTTCTATCCAACAAAATAATCTCAGCCAAAGACCTGATAAAAGCTTACCAAATGTATGCTTCAGTGTGCCCATTTGAAAAGCTAGCAATAATGTTTGCTAACCAATCAATTTGGAATCTAGCCAAGGAGGCTGAAACCCTTCACATTATAGACTTTGGTATTGGCTATGGATTCAAGTGGCCAGCACTTATCAACCGTATATCAAAACGTGCCGGTGGGCCACCCAAGTTGCGCATCACAGGGATAGAGCTGCCACAACCTGGTTTCAGACCAGAGGAGAAGGTGAAGGAGACAGGACATAGGCTTGCAGGTTATTGCAAGCGCTTCAATGTTCCATTTGAGTACAATGCCATTGCAAGGAGATGGGAAACCATCAAAGTTGAGGATCTCAAGATAGAGAAAAACGAATTTGTAGCTGTGAATTGCATGTTTCGGTTTAAGAACCTGTTTGATGAGACAGTTGTGGTGAATAATCCCAGGGATGCTGTTTTGAGTTTGATTAAGAAGGCAAATCCTGATATATTTGTGCATGGTATAGTCAACGGTTGCTATGATGCACCCTTCTTTGTGACACGGTTCCGGGAGGCACTATTTCATTATTCTGCTTTTTTTGACATATTAGACATCAATGTTGCTCGTGAAAATCCCATGAGGTTTATGTTTGAGAAGGAGTTGTTTGGGCGAGAAGTAATGAATATTATAGCTTGTGAAGGTAGTGAGAGGGTTGAGAGGCCTGAGACTTACAAGCAATGGCAGCTTCGGAATATGAGAAGTGGGTTTAAGCAGCTACCTTTGGATCACCAAATCATTGATATATTAAGGGATAGGTTGAGAGGTGATGGTCACAACACTAACTTTATGTCTGATGTGGATGGCAATTGGATGCTACAGGGTTGGAAGGGCCGAATCCTACATGCTTCCTCCTGTTGGATACCACTTTTTCAGTATCATTACATGTCTAGCAATTCTACAGATATAGTTGAAAGCCCTGAACAATGTCAAAATGAAGTAGAACATTCTCAACATATGTACACCGTAAACAATACCACAAAGAACAATGTTTTTTTTTTTCTCTGTACTTGTTGTGTTTCAAAATCTCTGCTGCTGCGACCCTTTTGTGATCCTGCTATGGATTCAAACTTTGTTGGAAGTAGCTACAACTTTGATGATGAAGGGAATTTAGTGCTAGTTTCTGATTCAAACGATTGGGATTTTCATGTCTCTGATCCTACTTTTTATCCATCCGATGCGGGCCCACTTGGTTTTCCTCCGAATACAGGCTTCAACTCAGAGCCACTTGTTGCATCCTCGGATGTTGCCATGGCCACGGTAGCGGATCCATCCCTTGAAGACGCTGACTTTTCAGAAACATTCAAGTTCATAAGCCAAGTTCTCATGGAAGAGAGCTTTGAACAGAGGCCATGCATGTGTTATGACCCTCTGAGTCTGCAACACACTGAGAAATCCTTCTATGATGCTTTGGAACCAAAACTACCTCTTTCCCCTAATCAGCACCCTTTAGAGAGCCCTGATGGGAATGGTTCAAATTCCACCACTGATTCTGGGAGCAGCGCCAATTCTCATGAGTTGAAACCTCATTCACCCGATTCACCTGTTTCTGGTGGTGATTATGCTTTCCATTCCCTTTCCCACACGCCCTCTTTGCAAGTTCCTCAGCATGGTTTGACTAATATTAGTGACGGACTATTAGATTTGGATTCTTCTGCAACCAAGCTCTTGGCTGAAAATATATTTAGTGATGCAGACTCTATGTTGCAGTTTAGAAGAGGGCTAGAGGAAGCTAGCAAGTTTCTTCCACAAAGGCCTCAGCTTTTCACTGGGTTGGAGAGCACCAAGACCAAGGTGTCTGCAGAGGCAGCAGAGAAGAGGGAGAGATCATATGGGTTGAAGGGTAGGAAGAATCATGAGCGGCAAGATAGCAATGATGAAGAGGAAGGAAGAAGCAACAAGCAGTATGCGGTTTGTGTTGAGGAGGAGAGTGAGATATCTGAAATATTTGACAGGGTTTTGCTTAGTGTTGAAAACGTGCCACTGTGTGCTGAAAAGAAGGATGGACCGGTGGTGGATAGTAACATTAACGCACAACTAAGTGAACAACCACATTTGTTTGAGGGAGGGAAGATTCGTTCCAAGAAACAAGGAAGGAAGAAGGAAGTGGATTTGAGGACCCTTTTGGTTCTATGTGCACAAGCTGTGTCTGCCAGTGACAACAGGACTGCTAATGAACTGCTGAAGCAGATTGGGGAGCATTCTTCTAGATCAGGTGATGCATCTCAGAGGCTGGCTCATTATTTTGCAGAAGCTCTAAAGACACGCTTGGTTGGTGCTGCTGGGACTGGAACCCAAATATTTTATATGAGCCACAAGAATTTCACTGCTACTCATTTCTTGAAGAAATTTGCACATTTCTTTGCAAATAAGATGATTATGAAAATGGCTGAAAAGGCGGAAACACTTCATATTATTGATTTTGGTATCCTTTATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTGTCAAATAGAAGTGGAGGGCCTCCCAAGCTGCGCGTCACAGGAATAGAGTATCCCCAAGCTGGCTTTCGTCCAGCAGAAAGAATTGAGGAAACCGGTCGCCGTCTAGACAAGTATTGCAAGCGTTTCAATGTTCCCTTCGAGTACAAGGCCATAGCATCGCGAAACTGGGAAACCATTCAAATTGAAGAGCTTAAAATTGAGCGGAATGAGGTGCTTGCTGTGAACTGTCTGGTAAGGTTTAAGAATTTGCTTGATGAGACAATTGAAGTGAACAGTCCTAGAAATGCTGTTCTGAATTTAATCAGGAAGATGAAACCAGATATTTTTGTTCATTCCTTAGTGAATGGATCATATAACGCCCCTTTCTTCGTCACACGCTTCAGGGAGGCACTGTTCCATTATTCTGCAATTTATGATATGTTTGATACTCTCATTTCCCGTGACAATCAATGGAGGTTGATGCTTGAGAGTGAATTTTTGGGTCGGGAGATTATGAATGTTGTAGCATGTGAATCTTTTGAGAGGGTCGAGAGGCCTGAAACATACAAACAATGGCAGGTTAGGAATACTAGGGCTGGTTTTAGGCAGCTCCCACTCGATAAGGAACTAATGGCCAAATTTAGGAATAAGTTAAGAGAGTGGTACCACCGGGATTTTGTCTTTGATGAAGATAACCACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCAACTTGCTGGGTGCCGGCATATTACTGTGGCAAAGGGATTGGTTCCGATTCTTTATTGAACGTCGCTTTCCTCCGTCCCATGATTGATATTTTCCACTATGTAGTTCTTAGTGCGGGAAGACACAATTTGTTCTCATGGGGGCATGCACCTGTTTACTCCTTTCCTCTGTTTGAAACTTTTATAAAGAACCCTTCTACTTTGAGGTTTGGTGCAAGCCAAATTGGAAATCATACAAGGGCACATTCTGGGTATCCATGTCCAACTATAGTTGGTTTCCCTGCAGCAGCCGCGCCATCTCCTAAATCTAATTTCTTGATAGACTTCAAGATGCTTTCTACCAACTCCCTTGTGCAGAATTTTCATGGTCCTATCTCGGTATTTCCAAATCAGAACCAAGCAATGAATGGTTTTGAGTTGGATGATTCATCTTCTCCTTCTTCTGGCACAAGCTCAAGCGGAGAATCCACTGAGGTAACCAAGTATTCCAATCCCATCCTCAGATACATAAGCGACATCCTCATGGATGAGGAAGATGACTTGGAGCGCAAACCCTGCATGTTGCAGGAATGTTTGAGACTCCAAGCTGAAGAAAAATCCTTTTATGATGTCCTTGGCCATAGTTACCCTTCATCACTCCATCAAATCACTTCTTGTTTCCATGATGAAAGCATAGGAATCACAGACCCTGATGAAAACTTTGGTCCCACTGCTAGTTTTGAGAGCAATGGCAGCTGCACCACTGATAACTCTTATGAGTCTGACTTGGTCAATTCTGTGGGTGAATTTGACTCTTCTTTCCTACAACTTCAAACCCCTTTAGTTGATTCCCCAGAAAGAACTTACCATGTAGTTCCTGATCCATTTAGTGAGTTTAAAAAAGCTGGCTTTTTTCATAATGGAACCTGGAATATCAGGCAGTCTCAGACAAAGCCACTTGTGGTGGTAGAGGGTTCTTCATCTTCAGCATCCCGAGAAAAAAGAAGCTATCGAATGGATGACACTTCTGATGAACAAGAGGGTAGAGGCAGCAAGGTTTCAGCTGTCTTTTCTGACAATTCAGAACCACTAGAGATCTTAGATGAGGTGCTGCTATGTCAGACTGGAAGAAGTCAAACCCCCCTTTGTGCTATTGAGGCATCACAAACTGTTGATTCAGTAGGAGGATCCAATGGAAAATCAACACGTTCACGTTCAAAGAAAGGGTCCACCAACACAGGTGGAACAGCTGTAGATTTGTGGACACTTCTAACCCAATGTGCACAGGCTGTGGCAAGTTATGACCAAAGGAATGCAAATGACTTACTCAAGCAAATTAGGCAACACTCTTCACGTTTTGGAGATGGACTTCAGCGTTTGGCTCATTACTTCGCCATTGGCCTTGAGACAAGATTGGCTGCTGGGACACCATCATATATGCCTTTAGAAGTGGCAACTGCTGCTGATATGTTGAAAGCTTACAAACTATTTGTTACATCCTCTCCTTTGCAGAGAATGTCAAATTTATTGACAACCAAGACAATCATTAGTCTTGTGAAGAATGAGAGCAGTGTTCATATTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCCTGCCTTATCAAGAAACTGTCAGAAAGACCTGGTGGTCCTCCAAGGCTTCACATAACCGGAATTGATCTTCCTCAGCCAGGATTTCGGCCTGCAGAAAGGGTTGAGGAAACCGGGCGGCGTTTGGAGAACTACTGCAAGAAGTTCAAGGTCCCATTTAAGTACAATTGCATTGCACAAAAATGGGAAACTATAAGACTTGAGGATATCAAGATTGACAGGAATGAAATAACTGTTGTTAACTGTTTGTACCGGCTGAGGAACCTGCCTGATGAAACTGTGACAGTGAACTGCCCAAGAGATGCTGTGTTGAAGTTGATCAGGAAGATTAATCCGAACATCTTCATCCATGGTGTAGTCAATGGCACTTATAGTGCACCCTTTTTCTTGACTCGGTTCAGAGAGGCACTCTACCACTTCTCATCACTGTTTGACATGTTTGATGCTAATGTGCAACGAGAAGACCCACAAAGGGAGATGCTTGAGAAAGGGTTGTTTGGAAGGGATGCCATCAATGTTATAGCGTGTGAAGGAGCAGAGAGGGTTGAAAGGCCTGAGACCTATAAGCAGTGGCAGGTTAGGAACCTGAGAGCTGGGTTCAAGCAAGTCAGGTTGGATCCTGAATTGGTGAATGAAGCCAAAACAATGGTGAAGAGGGAATACCACAAAGATTTTGTGGTGGCTGAGGATGGCAAGTGGGTTTTGCAGGGGTGGAAAGGGCGTATTCTCAATGCTTTTTCTGCTTGGGTTCCTGCTTAA 5916 0.4315 MDDSELSELFDKVLLGTGLGKGTPPNMTFQEGGGNDKQVVDLRTLLMLCAQASASDNLSYANKLLKQIRQHSSIIGDGTQRLAHYFGNALEARLAGTGLHVYSVLSNKIISAKDLIKAYQMYASVCPFEKLAIMFANQSIWNLAKEAETLHIIDFGIGYGFKWPALINRISKRAGGPPKLRITGIELPQPGFRPEEKVKETGHRLAGYCKRFNVPFEYNAIARRWETIKVEDLKIEKNEFVAVNCMFRFKNLFDETVVVNNPRDAVLSLIKKANPDIFVHGIVNGCYDAPFFVTRFREALFHYSAFFDILDINVARENPMRFMFEKELFGREVMNIIACEGSERVERPETYKQWQLRNMRSGFKQLPLDHQIIDILRDRLRGDGHNTNFMSDVDGNWMLQGWKGRILHASSCWIPLFQYHYMSSNSTDIVESPEQCQNEVEHSQHMYTVNNTTKNNVFFFLCTCCVSKSLLLRPFCDPAMDSNFVGSSYNFDDEGNLVLVSDSNDWDFHVSDPTFYPSDAGPLGFPPNTGFNSEPLVASSDVAMATVADPSLEDADFSETFKFISQVLMEESFEQRPCMCYDPLSLQHTEKSFYDALEPKLPLSPNQHPLESPDGNGSNSTTDSGSSANSHELKPHSPDSPVSGGDYAFHSLSHTPSLQVPQHGLTNISDGLLDLDSSATKLLAENIFSDADSMLQFRRGLEEASKFLPQRPQLFTGLESTKTKVSAEAAEKRERSYGLKGRKNHERQDSNDEEEGRSNKQYAVCVEEESEISEIFDRVLLSVENVPLCAEKKDGPVVDSNINAQLSEQPHLFEGGKIRSKKQGRKKEVDLRTLLVLCAQAVSASDNRTANELLKQIGEHSSRSGDASQRLAHYFAEALKTRLVGAAGTGTQIFYMSHKNFTATHFLKKFAHFFANKMIMKMAEKAETLHIIDFGILYGFQWPILIKFLSNRSGGPPKLRVTGIEYPQAGFRPAERIEETGRRLDKYCKRFNVPFEYKAIASRNWETIQIEELKIERNEVLAVNCLVRFKNLLDETIEVNSPRNAVLNLIRKMKPDIFVHSLVNGSYNAPFFVTRFREALFHYSAIYDMFDTLISRDNQWRLMLESEFLGREIMNVVACESFERVERPETYKQWQVRNTRAGFRQLPLDKELMAKFRNKLREWYHRDFVFDEDNHWMLQGWKGRILYASTCWVPAYYCGKGIGSDSLLNVAFLRPMIDIFHYVVLSAGRHNLFSWGHAPVYSFPLFETFIKNPSTLRFGASQIGNHTRAHSGYPCPTIVGFPAAAAPSPKSNFLIDFKMLSTNSLVQNFHGPISVFPNQNQAMNGFELDDSSSPSSGTSSSGESTEVTKYSNPILRYISDILMDEEDDLERKPCMLQECLRLQAEEKSFYDVLGHSYPSSLHQITSCFHDESIGITDPDENFGPTASFESNGSCTTDNSYESDLVNSVGEFDSSFLQLQTPLVDSPERTYHVVPDPFSEFKKAGFFHNGTWNIRQSQTKPLVVVEGSSSSASREKRSYRMDDTSDEQEGRGSKVSAVFSDNSEPLEILDEVLLCQTGRSQTPLCAIEASQTVDSVGGSNGKSTRSRSKKGSTNTGGTAVDLWTLLTQCAQAVASYDQRNANDLLKQIRQHSSRFGDGLQRLAHYFAIGLETRLAAGTPSYMPLEVATAADMLKAYKLFVTSSPLQRMSNLLTTKTIISLVKNESSVHIIDFGICYGFQWPCLIKKLSERPGGPPRLHITGIDLPQPGFRPAERVEETGRRLENYCKKFKVPFKYNCIAQKWETIRLEDIKIDRNEITVVNCLYRLRNLPDETVTVNCPRDAVLKLIRKINPNIFIHGVVNGTYSAPFFLTRFREALYHFSSLFDMFDANVQREDPQREMLEKGLFGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQVRLDPELVNEAKTMVKREYHKDFVVAEDGKWVLQGWKGRILNAFSAWVPA* 1972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2307 1971 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 415 IPR005202 -
Apr2g2307 1971 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 534 1194 IPR005202 -
Apr2g2307 1971 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1505 1970 IPR005202 -
Apr2g2307 1971 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1326 1404 IPR005202 -
Apr2g2307 1971 PANTHER SCARECROW-LIKE PROTEIN 34 3 415 - -
Apr2g2307 1971 PANTHER SCARECROW-LIKE PROTEIN 34 1326 1404 - -
Apr2g2307 1971 PANTHER SCARECROW-LIKE PROTEIN 34 534 1194 - -
Apr2g2307 1971 PANTHER SCARECROW-LIKE PROTEIN 34 1505 1970 - -
Apr2g2307 1971 MobiDBLite consensus disorder prediction 609 636 - -
Apr2g2307 1971 Pfam GRAS domain family 42 413 IPR005202 -
Apr2g2307 1971 Pfam GRAS domain family 831 1192 IPR005202 -
Apr2g2307 1971 Pfam GRAS domain family 1603 1968 IPR005202 -
Apr2g2307 1971 ProSiteProfiles GRAS family profile. 822 1193 IPR005202 -
Apr2g2307 1971 MobiDBLite consensus disorder prediction 719 759 - -
Apr2g2307 1971 MobiDBLite consensus disorder prediction 725 759 - -
Apr2g2307 1971 MobiDBLite consensus disorder prediction 1324 1347 - -
Apr2g2307 1971 ProSiteProfiles GRAS family profile. 33 414 IPR005202 -
Apr2g2307 1971 MobiDBLite consensus disorder prediction 1512 1529 - -
Apr2g2307 1971 MobiDBLite consensus disorder prediction 1502 1535 - -
Apr2g2307 1971 ProSiteProfiles GRAS family profile. 1592 1969 IPR005202 -
Apr2g2307 1971 MobiDBLite consensus disorder prediction 1573 1594 - -
Apr2g2307 1971 MobiDBLite consensus disorder prediction 599 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2307 Apr-Chr2 28017393 28032861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2307 1 415 GRAS Transcription Factor Family AT1G07530 58.957 6.52e-174 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr2g2307 GRAS 1.1e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2307 - - aprc:113855970 3929.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2307 2 28017393 28032861 Apr2g2307 2 28017393 28032861 ECH
Apr2g2307 2 28017393 28032861 Apr3g0197 3 3672662 3675583 ECH
Apr2g2307 2 28017393 28032861 Apr3g0197 3 3672662 3675583 PCT
Apr3g0198 3 3682042 3685113 Apr2g2307 2 28017393 28032861 PCT