Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2297 ATGGGAGTTTGTTTGAGCGCCCAAATAAAAGCTGAAAGCCCATACAACACTGGGTTCAATTCAAAGTGTGTGAGTAGTGATGGAAATGATCTTGGGAGCACAAACAGTAAAGTTTCAGTAGTGTCGGTGCCTCAAACTCCTAGGAGTGAGGGTGAGATCTTGCAGTCATCTAATTTGAAGAGCTTTACTTTAGCAGAACTTAAGACAGCCACTAGAAATTTTCGTCCAGACAGTGTGTTAGGAGAGGGTGGTTTTGGATCAGTTTTTAAAGGGTGGATTGATGAGAATTCATTGGCTGCTGCTAAACCTGGCACTGGCATTGTTATTGCTGTAAAAAGACTTAATCAAGATGGCGTCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTACCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGTTATTGCCTTGAAGATGAACACCGCCTTCTGGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTCCAACCTCTTTCTTGGAGCCTCCGCTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTTTGCACAGTACTGAAACAAAAGTGATATATCGAGACTTTAAGAGTTCAAATGTCTTGCTGGATTCAAAATATAATGCAAAGCTTTCTGATTTTGGGCTGGCAAAGGATGGACCTACAGGTGACAAAAGTCATGTATCCACCAGGGTAATAGGAACCTACGGATATGCAGCTCCTGAGTATCTAGCCACAGGTCATCTTACTGCAAGGAGTGATGTCTATAGTTTTGGAGTTGTGCTGCTAGAATTGTTATCTGGCAAGCGTGCTGTTGATAAGAATAGACCATCTGGACAACACAATTTGGTGGAATGGGCTAAACCCTACCTGGCTAACAAACGTAAGCTTTTTCGCGTGTTGGACAGCCGTCTCGAAGGACAGTATTCAACAGATGATGCCTCCAAGGTAGCCACACTTGCTTTGAGGTGCCTATCAACAGAACCCAAGTTCAGGCCAAACATGAATGAAGTGTTTAGAACATTGGAACAGTTACAAGTTCCTACTGTACATAATAGAGGCAATCAAAATCCTTCTGTCAATGGATCTCGTCCTCGTAGGAGAAGTGCTGATGATATTAACCGTATGAAGACAACTCCCACAGCATATCCCCGGCCCTCTGCATCCCCTCTCTATACTTGA 1224 0.4387 MGVCLSAQIKAESPYNTGFNSKCVSSDGNDLGSTNSKVSVVSVPQTPRSEGEILQSSNLKSFTLAELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLAAAKPGTGIVIAVKRLNQDGVQGHREWLAEVNYLGQLSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSTETKVIYRDFKSSNVLLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVIGTYGYAAPEYLATGHLTARSDVYSFGVVLLELLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKLFRVLDSRLEGQYSTDDASKVATLALRCLSTEPKFRPNMNEVFRTLEQLQVPTVHNRGNQNPSVNGSRPRRRSADDINRMKTTPTAYPRPSASPLYT* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2297 407 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Apr2g2297 407 SUPERFAMILY Protein kinase-like (PK-like) 51 359 IPR011009 -
Apr2g2297 407 MobiDBLite consensus disorder prediction 360 378 - -
Apr2g2297 407 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Apr2g2297 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Apr2g2297 407 CDD STKc_IRAK 80 359 - -
Apr2g2297 407 ProSiteProfiles Protein kinase domain profile. 74 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2297 407 PANTHER OS01G0588500 PROTEIN-RELATED 25 371 - -
Apr2g2297 407 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 25 371 - -
Apr2g2297 407 MobiDBLite consensus disorder prediction 360 407 - -
Apr2g2297 407 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Apr2g2297 407 Gene3D Transferase(Phosphotransferase) domain 1 160 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2297 Apr-Chr2 27953862 27956932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2297 20 356 Glycoside Hydrolase AT3G07070 45.858 1.84e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr2g2297 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2297 - - gmx:100798404 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2297 2 27953862 27956932 Apr2g2297 2 27953862 27956932 ECH
Apr2g2297 2 27953862 27956932 Apr3g1480 3 29410362 29413997 PCT