Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2277 ATGTCTGCAGCTCTCGATATGACCCTAGACGATATCATCAAGAACAACAAAAAATCCGCACCCGCCAACTCCAAGCCCCGAACCCGAGCACCAGGACCCGGACCCGCTCGCCGCTTCTCCAACCGTGCCGCCAACCGCGTCGCACCCTACACCACCGCTAAGGCGCCGGAGACTGCGTGGCAGCATGACATGTTTGCAGATCAGGCTTTACACGTGGCAGCGTATCCAGGTCAAGGTGGTCGAGCGTCTTCCATCGAAACAGGGACCAAGCTCTACATATCTAACTTGGATTACGGTGTTTCAAATGATGATATTAAGGAGTTGTTTTCTGAAGTTGGTGACCTGAAACGGCATACTGTTCATTACGACAGGAGCGGGAGATCGAAGGGTACAGCAGAAGTAGTCTTCTCGCGACGGGCTGATGCTGTAGCTGCAGTGAAGAGGTACAACAATGTTCAACTAGATGGAAAACCCATGAAGGTAGAGATTCTGGGAACAAACATTGCTACACATGCCATCGCACCTGCTGCTACACCTGAAACTTTTGGAAATTCAAATGGAGTTCCCAGAAGTGGACAAGGGAGAGGTGGAGCATTGGGAAGGCCACGTGGTGGAGGTAGAGGGCGTGGTGTTCGAAGGGTTCGAGGACGTGGAAGAGGTCGTGGTGAAAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGATAAGTATCATGCTGAGGCTATGCAATTAAACTGA 738 0.5108 MSAALDMTLDDIIKNNKKSAPANSKPRTRAPGPGPARRFSNRAANRVAPYTTAKAPETAWQHDMFADQALHVAAYPGQGGRASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEILGTNIATHAIAPAATPETFGNSNGVPRSGQGRGGALGRPRGGGRGRGVRRVRGRGRGRGEKVSAEDLDADLDKYHAEAMQLN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2277 245 SMART rrm1_1 90 162 IPR000504 GO:0003723
Apr2g2277 245 MobiDBLite consensus disorder prediction 179 230 - -
Apr2g2277 245 CDD RRM_THOC4 89 163 - -
Apr2g2277 245 SMART FoP_duplication_2 178 245 IPR025715 -
Apr2g2277 245 Gene3D - 77 227 IPR012677 -
Apr2g2277 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Apr2g2277 245 SUPERFAMILY RNA-binding domain, RBD 70 164 IPR035979 GO:0003676
Apr2g2277 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Apr2g2277 245 MobiDBLite consensus disorder prediction 10 45 - -
Apr2g2277 245 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 244 - -
Apr2g2277 245 Pfam C-terminal duplication domain of Friend of PRMT1 188 239 IPR025715 -
Apr2g2277 245 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2277 Apr-Chr2 27822391 27826247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2277 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 1.94e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2277 K12881 - gmx:100783362 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2277 2 27822391 27826247 Apr2g2277 2 27822391 27826247 ECH
Apr2g2277 2 27822391 27826247 Apr3g1458 3 29222286 29226435 ECH
Apr2g2277 2 27822391 27826247 Apr3g1458 3 29222286 29226435 PCT