Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2272 ATGAAAAGAGAAAGAGAAGAGGGTGAGTTAAACAAGGGTAATTGTTTGATGCTACTAACCAAAGTTGGTGAGAGTGAAACCAACTCATCAAAGGATGATATTGGTGCTTTTAAGTGCAAAACATGCAATAGACGTTTCTCTTCTTTTCAAGCCCTTGGAGGCCACAGAGCCAGTCACAAGAAGCCGAAGCTCATGGTTACAGATCTTTCGTGCCACCATGACAGGTTACAAAGCCCAACCATGAAGCCCAGGATGCACCCATGTCCGGTTTGTGGGCTTGAGTTTGCTATTGGACAAGCTCTGGGAGGGCACATGAGAAAGCATAGAAGCGCTATTAATGATGGTTTGATGACTCTTAAGCATTCTTTGCCCATTTTGAAGAAATCGAAAGATGCTAAAAGGTTGAATGGGTGCTTAGACTTGAACCTGACGCCATTGGAGAATGATCTTAAGCTCAACTTAAGAGTACGTCTGTCCTAA 480 0.4333 MKREREEGELNKGNCLMLLTKVGESETNSSKDDIGAFKCKTCNRRFSSFQALGGHRASHKKPKLMVTDLSCHHDRLQSPTMKPRMHPCPVCGLEFAIGQALGGHMRKHRSAINDGLMTLKHSLPILKKSKDAKRLNGCLDLNLTPLENDLKLNLRVRLS* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2272 159 SMART c2h2final6 86 108 IPR013087 -
Apr2g2272 159 SMART c2h2final6 37 59 IPR013087 -
Apr2g2272 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Apr2g2272 159 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Apr2g2272 159 PANTHER ZINC FINGER PROTEIN ZAT5 8 155 - -
Apr2g2272 159 SUPERFAMILY beta-beta-alpha zinc fingers 37 108 IPR036236 -
Apr2g2272 159 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Apr2g2272 159 Gene3D Classic Zinc Finger 19 111 - -
Apr2g2272 159 Pfam C2H2-type zinc finger 86 110 - -
Apr2g2272 159 Pfam C2H2-type zinc finger 36 62 - -
Apr2g2272 159 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 8 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2272 Apr-Chr2 27796071 27797445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2272 1 152 C2H2 Transcription Factor Family AT2G37430 45.181 2.12e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g2272 zf-C2H2_6 1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2272 - - gmx:100781211 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2272 2 27796071 27797445 Apr2g2272 2 27796071 27797445 ECH
Apr2g2272 2 27796071 27797445 Apr3g1453 3 29191998 29192633 ECH
Apr2g2272 2 27796071 27797445 Apr3g1453 3 29191998 29192633 PCT