Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2269 ATGGTTCAACAGGAAGTGCGTAAAGGGCCATGGACAGAACAGGAAGACTTGAAATTGGTCTCCTTTGTGGGCTTGCTCGGAGACCGTAGATGGGACTTTTTAGCTAAGGTATCAGGTTTGAAGGTGGAGGGAGACAGTTTGAATAGAACAGGTAAAAGTTGCAGGTTACGTTGGGTTAATTACCTTCATCCTGGTCTCAAACGTGGGAAGATGACACCCCAGGAAGAGCGCCTCGTCTTGGACCTTCACGCTAAATGGGGAAATAGATGGTCAAGAATTGCTAGGAAATTACCAGGGCGCACAGACAATGAGATTAAGAATTATTGGAGAACTCTGATGAGGAAGAAGGCTCAAGACAAAAAGCGAGGAGAAGCTTCTAGTGTTCATTCGTCATCAGAATCCTCAAACAATCATGCAGTGGATTCACATGCTTCCAAAAAAGCCGGGGAAGAAAGCTTTTATGACACGGGTGGTCCTTGTCTCATAGGTTCAACCCAAGTTAAGATAGGAGAGGTTCAACAAGGATTCATCACCATGGATGATATATGGAAAGATATTGATATGTCAGAAGAGAAGATTCTGCAGCCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGTCCACGAGTTCCTTCTCCATCATCATGGGAGTATTCTTCAGACCCTCTATGGGTGATGGATGAAGAAAGCATGTTTTTTCCGATGAATGACCCATATTTTTCTTGCTATGCACAAGACAGTGCATTTCTAACCGGCTAA 768 0.4427 MVQQEVRKGPWTEQEDLKLVSFVGLLGDRRWDFLAKVSGLKVEGDSLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLDLHAKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKKRGEASSVHSSSESSNNHAVDSHASKKAGEESFYDTGGPCLIGSTQVKIGEVQQGFITMDDIWKDIDMSEEKILQPVYDGHSEEGCNFSCPRVPSPSSWEYSSDPLWVMDEESMFFPMNDPYFSCYAQDSAFLTG* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2269 255 Pfam Myb-like DNA-binding domain 8 62 IPR001005 -
Apr2g2269 255 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Apr2g2269 255 SMART sant 7 64 IPR001005 -
Apr2g2269 255 SMART sant 67 115 IPR001005 -
Apr2g2269 255 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr2g2269 255 MobiDBLite consensus disorder prediction 128 142 - -
Apr2g2269 255 CDD SANT 10 62 IPR001005 -
Apr2g2269 255 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 237 - -
Apr2g2269 255 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 237 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr2g2269 255 ProSiteProfiles Myb-like domain profile. 3 62 IPR001005 -
Apr2g2269 255 Gene3D - 70 147 - -
Apr2g2269 255 Gene3D - 8 67 - -
Apr2g2269 255 MobiDBLite consensus disorder prediction 115 151 - -
Apr2g2269 255 SUPERFAMILY Homeodomain-like 6 109 IPR009057 -
Apr2g2269 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr2g2269 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 62 IPR017930 -
Apr2g2269 255 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2269 Apr-Chr2 27765229 27766230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2269 1 232 MYB Transcription Factor Family AT5G59780 57.940 1.04e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g2269 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2269 K09422 - gmx:100776886 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2269 2 27765229 27766230 Apr2g2269 2 27765229 27766230 ECH
Apr3g1451 3 29176864 29178145 Apr2g2269 2 27765229 27766230 PCT