Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2266 ATGTCTGAAGAGGCCGTAGACGTATGTTTAATTTTTGCAATATATATGTCATTCCTCGTACTGAGTCAGTGCAACAATCTTACGCGTCTTTTGAATGGACTTAACCGTTCAAGCTCTTCTACAAACTTTGTTACTGATGATTCTATACAGCTTCAACGTGGTAACTTAGATTCCTCGCTCATAAACTCTCTTCCTTTGTGTGAGTTTAAGAAAAATGAGAGGGAACAAATAGCAATTAACGCTGATTGTGCCATTTGCTTGGGGGAATTTGAAGAAGGAGAATTGCTAAAACTTCTTCCTAATTGCTCCCATGGCTTCCATGTTTCCTGCATTGACACGTGGTTTCAGTCTCATTCGAATTGCCCCCTCTGCAGATCTCGTGTCACTCATGATTTTGTTGCTAACCCAGAATGTTCAGTTTCTTTGTACACGTTGCTACAAGGTTTGAGGAGGGAGGATTTCTCCACAGAAAGGGCTGCGCATTTCCAATCCATTCCTTCTGAAAGCCTTCAAAATTTGGAGATTAGACATGAGCCTTGCCCAGATTAA 549 0.4117 MSEEAVDVCLIFAIYMSFLVLSQCNNLTRLLNGLNRSSSSTNFVTDDSIQLQRGNLDSSLINSLPLCEFKKNEREQIAINADCAICLGEFEEGELLKLLPNCSHGFHVSCIDTWFQSHSNCPLCRSRVTHDFVANPECSVSLYTLLQGLRREDFSTERAAHFQSIPSESLQNLEIRHEPCPD* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2266 182 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Apr2g2266 182 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 139 IPR044675 -
Apr2g2266 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 131 IPR013083 -
Apr2g2266 182 SUPERFAMILY RING/U-box 82 132 - -
Apr2g2266 182 CDD RING-H2_PA-TM-RING 82 125 - -
Apr2g2266 182 SMART FANCL_C_2 79 133 - -
Apr2g2266 182 Pfam Ring finger domain 82 125 IPR001841 -
Apr2g2266 182 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 139 - -
Apr2g2266 182 SMART ring_2 83 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2266 Apr-Chr2 27744289 27744837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2266 40 126 C3H Transcription Factor Family AT2G27940 47.126 2.82e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2266 - - gmx:102660592 162.54