Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2250 ATGTATGCACCCTCCAACACCGGATCAACCCTCCCCTCTCCTTCCCCTCTAATGCACCACAGCTTCCCTGAACTCACCGAGTTTGAGACTCTCTCCCAACTCAACAACTCGGAGACGAGTTACTACTACAACAGCCATAGTTGTGGCAGTGGTTATAGCAGCTATGGTGGGTCACCCATTTCTCTGGCGAGTCCCACTTTGATGCAGAGAAGTGTTAGCAGCCATTCCCTCCAATTCCATCATCACAATAGTGGCACCCACCACCCCTTCACTGCTCTATTCGCTGAGCTCCTTGACTCCGACGACGCCCCCGTCAGAAGAACTTCCAGTACTGGTGATCTGCAGGGGGTTAATGGAATGCAACAGAATCATCACTTGGATAGTCCATTGTCAAGCGAGAGCAGTATGATCATCGAAGGGATGAGCAGAGCCTGTAGATATAGTCCGGAGGAGAAGAAGGTCAGAATTGAGAGATACAGAAGCAAGAGGAACCAGAGGAACTTCAACAAGAAAATTAAGTATGCATGCAGGAAGACATTGGCAGACAGCAGGCCACGCATTAGAGGACGGTTTGCGAGAAATGATGAAACAGAGAAGAACACTACAATTCAGTGGAGCCAAATTGGTGGTGGAGAGGAAGAGGATGAGGAAGATGAGAATTGGGTCAGTGTCTTAGATTCCATAGTTGCTGCTAATCTTGTTCAGGAGTCTCAAGGCAGTTCCTCTTATGGTTTATTATATTAG 744 0.4798 MYAPSNTGSTLPSPSPLMHHSFPELTEFETLSQLNNSETSYYYNSHSCGSGYSSYGGSPISLASPTLMQRSVSSHSLQFHHHNSGTHHPFTALFAELLDSDDAPVRRTSSTGDLQGVNGMQQNHHLDSPLSSESSMIIEGMSRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDETEKNTTIQWSQIGGGEEEDEEDENWVSVLDSIVAANLVQESQGSSSYGLLY* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2250 247 PANTHER CCT MOTIF PROTEIN 6 247 - -
Apr2g2250 247 MobiDBLite consensus disorder prediction 107 132 - -
Apr2g2250 247 MobiDBLite consensus disorder prediction 192 216 - -
Apr2g2250 247 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515
Apr2g2250 247 Pfam CCT motif 154 194 IPR010402 GO:0005515
Apr2g2250 247 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 247 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2250 Apr-Chr2 27633470 27635405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2250 140 211 C2C2-CO-like Transcription Factor Family AT5G24930 45.205 2.20e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr2g2250 CCT 9e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2250 - - gmx:102661609 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2250 2 27633470 27635405 Apr2g2250 2 27633470 27635405 ECH
Apr2g2250 2 27633470 27635405 Apr3g1423 3 28828736 28831188 PCT