Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2244 ATGGAGCAGTCGGAAAAATCACCAAAGAAATTATCATCACTGAGATCATCATTTCCCAGAGACCCACGTGGCTCACTCGAAGTGTTCAACCCAACAACTTCAGCCAACTCCAGAGCGGGGTCACAACCGTTGTGGAAAACTTGGACGGAATCCGAAGAACCACGGAACCTCTCCGATGAAATTGCCACCTCCACCTCCTGGATGGCCATCAATTCCCCACCTCCGCCCACCGGAGAATGTGGTGCCGCCGCCCAGAGAGCAGCCGAGTGGGGTTTGGTCCTCAGAACCGACACCGAGACCGGCAAGCCTCAAGGCGTGACAGTTCGGAACTCCGGCGGCGAGGAACCCAACGCCAAACTCGCCGCCTCTTCTTCTTCCAGAAGAAACTCTCGCAACTCCGCCAGAACATCCGGCGACTCTTCGGACGGCGGCGCCGTCGGCTGGATTCCGAGAGTTTCGGAGGACTTGAAAGACGCTTTATCGGCTTTCCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATCCTATATGCCAGTGCGGGGTTTTTCAAAATGACGGGTTATACGTCCAAGGAAGTCATAGGGAGAAACTGTCGGTTTTTGCAGGGTGCGGATTCGGATTCTGATGACGTGGCAAAGATAAGGGAAGCATTGCAAGCAGGGAAAAGTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGAACGCCTTTCTGGAATCTTCTAACCATTTCACCTATTAAAGGAGATGATGGCAAAGTGATCAAATTTATCGGAATGCAAGTGGAGGTTAGCAAGCATACGGAGGGGTCCAAGGAGAAGACGCTACGTCCCAATGGATTGCCAGAATCCTTGATTCGATATGATGCCCGTCAGAAAGAGAAGGCTACAACTTCAGCATCTGAGTTGGTGCAGGCCATGAAGCGCCCCCGAGCATTCAGTGAATCCACAAACCGTCCCTTCATCAGAAAATCAGAAGGTGCTGAACAAGAAGAAGAAGATGATGACGACGAAGACAAAGCAGAAAAAACACTAAGAAGAAAATCTGAGAGTGTGGCTTCGTTTAGACGGAAATCACAAGGAGGAAATAGAATTTCAATGCAGCGTATCAGTGAACTGCCTGAAAATAAACAGAAAAACTCTCATCGCCGTTCTTTCATGGGGTTCATGAGGAAGAGTCAGTCCAGTGATGAAAGCATCAATAATGAGGTTGTTGAGGACGTCAGCTCTGAGAGTGAGGATGATGAAAGGTCTCATAGTTTTGAATTCGATGACAAAGAAAATCAGAGGGAAAAGCGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCACGGCTTCCTGACAATCCTATAATTTTTGCATCTGATAGTTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCCGAGACTGATCCAGCAACTGTGAGAAAAATTAGGGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTCATTAATTATACAAAGAGTGGAAAAAAATTCTGGAACTTGTTTCATTTACAACCCATGCGTGATCAGAAGGGTGAGGTGCAGTATTTTATTGGTGTTCAACTTGATGGCAGTCAACATGTAGAGCCTCTTCACAACTGCATCACAGAAGATACTGCAAAGGAGGGAGAACAAATGGTCAAACAAACTGCAGAAAATGTGGATGAGGCGGTGAGAGAACTTCCAGATGCTAATATGAAACCAGACGATTTATGGATGAATCATTCAAAAGTAGTTCGCCCCAAACCTCACAGGAAGAATGATGCTGCATGGAGAGCTATCCAGAAGATCCTAGAAAGTGGAGAACAAATAGGTCTAAGTCACTTTAAGCCAATTAAACCTTTGGGGTCAGGAGACACTGGCAGTGTGCATCTGGTGGAGCTACGCGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTTGATAAGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACACGTTTGTTTGATAACTGATTATTGTCCTGGTGGAGAACTGTTCCTGCTTCTTGATCGACAGCCAACCAAGGTTCTCAAGGAAGACGCAGTGAGATTTTATGCAGCCGAAGTAGTGATTGCATTGGAGTATCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTAATCCAGAGCAATGGACATGTGTCTTTAACAGATTTTGATTTGTCATGTCTAACATCTTGCAAGCCACAGCTTATAATTCCAGCAACAAAGGAAAAGAAGAAAAAGAAGAAAAAACAGAGAAGTCAGCAGGTTCCAATGTTTATGGCTGAACCAGTGAGAGCATCGAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCTGTGGATTGGTGGGCTCTTGGTATTCTTCTATATGAAATGCTTTATGGGTATACGCCATTCAGGGGAAAGGCAAGGCAAAAAACATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGCAAACCGGTAAGTCTCCATGCAAAGCAGCTAATATACTGGTTGTTGCACAGAGATCCCAAAGACAGATTGGGTTCACATGAAGGAGCAAATGAAATTAAGCGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTCCATGAAACCTCCTGAGGTTGATGCTCCTCCCTCACTTGCAACTGAAGAAGAAAAAGAAGCCAAAAATATAGAGCCCGAGCTAGATGTTTTTTGA 2910 0.4485 MEQSEKSPKKLSSLRSSFPRDPRGSLEVFNPTTSANSRAGSQPLWKTWTESEEPRNLSDEIATSTSWMAINSPPPPTGECGAAAQRAAEWGLVLRTDTETGKPQGVTVRNSGGEEPNAKLAASSSSRRNSRNSARTSGDSSDGGAVGWIPRVSEDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADSDSDDVAKIREALQAGKSYCGRLLNYKKDGTPFWNLLTISPIKGDDGKVIKFIGMQVEVSKHTEGSKEKTLRPNGLPESLIRYDARQKEKATTSASELVQAMKRPRAFSESTNRPFIRKSEGAEQEEEDDDDEDKAEKTLRRKSESVASFRRKSQGGNRISMQRISELPENKQKNSHRRSFMGFMRKSQSSDESINNEVVEDVSSESEDDERSHSFEFDDKENQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCITEDTAKEGEQMVKQTAENVDEAVRELPDANMKPDDLWMNHSKVVRPKPHRKNDAAWRAIQKILESGEQIGLSHFKPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLIIPATKEKKKKKKKQRSQQVPMFMAEPVRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKARQKTFANILHKDLKFPKSKPVSLHAKQLIYWLLHRDPKDRLGSHEGANEIKRHPFFRGVNWALVRSMKPPEVDAPPSLATEEEKEAKNIEPELDVF* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2244 969 MobiDBLite consensus disorder prediction 391 410 - -
Apr2g2244 969 SUPERFAMILY PYP-like sensor domain (PAS domain) 173 265 IPR035965 -
Apr2g2244 969 MobiDBLite consensus disorder prediction 416 438 - -
Apr2g2244 969 MobiDBLite consensus disorder prediction 359 378 - -
Apr2g2244 969 ProSiteProfiles Protein kinase domain profile. 639 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2244 969 Pfam PAS domain 461 553 IPR000014 -
Apr2g2244 969 Pfam PAS domain 173 269 IPR000014 -
Apr2g2244 969 ProSitePatterns Protein kinases ATP-binding region signature. 645 668 IPR017441 GO:0005524
Apr2g2244 969 Gene3D PAS domain 166 323 - -
Apr2g2244 969 SUPERFAMILY PYP-like sensor domain (PAS domain) 454 553 IPR035965 -
Apr2g2244 969 MobiDBLite consensus disorder prediction 1 60 - -
Apr2g2244 969 SMART pas_2 154 223 IPR000014 -
Apr2g2244 969 SMART pas_2 440 509 IPR000014 -
Apr2g2244 969 MobiDBLite consensus disorder prediction 27 51 - -
Apr2g2244 969 ProSiteProfiles PAC domain profile. 512 566 IPR000700 -
Apr2g2244 969 Gene3D Phosphorylase Kinase; domain 1 638 722 - -
Apr2g2244 969 CDD PAS 179 268 IPR000014 -
Apr2g2244 969 MobiDBLite consensus disorder prediction 950 969 - -
Apr2g2244 969 TIGRFAM sensory_box: PAS domain S-box protein 179 272 IPR000014 -
Apr2g2244 969 TIGRFAM sensory_box: PAS domain S-box protein 463 553 IPR000014 -
Apr2g2244 969 CDD PAS 453 553 IPR000014 -
Apr2g2244 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Apr2g2244 969 MobiDBLite consensus disorder prediction 296 438 - -
Apr2g2244 969 Coils Coil 570 590 - -
Apr2g2244 969 MobiDBLite consensus disorder prediction 344 358 - -
Apr2g2244 969 ProSiteProfiles PAS repeat profile. 152 225 IPR000014 -
Apr2g2244 969 SMART serkin_6 639 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2244 969 ProSiteProfiles PAC domain profile. 226 280 IPR000700 -
Apr2g2244 969 MobiDBLite consensus disorder prediction 100 140 - -
Apr2g2244 969 Gene3D PAS domain 426 591 - -
Apr2g2244 969 SMART pac_2 229 271 IPR001610 -
Apr2g2244 969 SMART pac_2 515 557 IPR001610 -
Apr2g2244 969 MobiDBLite consensus disorder prediction 95 147 - -
Apr2g2244 969 PANTHER FLIPPASE KINASE 1-RELATED 103 963 - -
Apr2g2244 969 ProSiteProfiles PAS repeat profile. 438 511 IPR000014 -
Apr2g2244 969 Pfam Protein kinase domain 641 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2244 969 Gene3D Transferase(Phosphotransferase) domain 1 723 943 - -
Apr2g2244 969 MobiDBLite consensus disorder prediction 943 969 - -
Apr2g2244 969 PANTHER PHOTOTROPIN-1 103 963 - -
Apr2g2244 969 SUPERFAMILY Protein kinase-like (PK-like) 622 949 IPR011009 -
Apr2g2244 969 CDD STKc_phototropin_like 637 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2244 Apr-Chr2 27564492 27577012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2244 1 967 AGC Kinase Gene Family AT3G45780 69.436 0.0 1347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Apr2g2244 Pkinase 2.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2244 K20715 - gmx:100817565 1605.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2244 2 27564492 27577012 Apr2g2244 2 27564492 27577012 ECH
Apr2g2244 2 27564492 27577012 Apr3g1419 3 28748477 28762744 PCT