Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2242 ATGAGTTGCTTTGGTTGGGCAACCAAATCAAGCAAAAAATCGAACAGTAGCAACAACGAGAAGCCCAGCAATGTCACTGCCGTTGAAAAAGTCAAAGTTGATTTGAATGTGAGCGGTAAAAAAGAAGATAATTCAAAGTCTGATCAACTGTCTCTAGATGTGAAGAATTTGAATTTAAAAGAGGAGTCCAATGAAGAAAAAGTTAACAATTACAGGGCACAGACATTTACTTTTGATGAGCTTGCAGCTGCAACAAGGAATTTTAGGTCGGATTGCTTTTTGGGTGAAGGCGGGTTTGGCAAGGTTTACAAGGGGCACATAGAGAAAATAAATCAGGTTGTAGCAATAAAGCAACTGGACCCTCATGGGCTTCAAGGAATTAGGGAATTTGTTGTTGAAGTTTTGACACTGAGTATGGCAGACCACCCTAATCTGGTCAAGTTAATTGGGTTTTGTGCTGAGAGAGAGCAGAGGCTGTTGGTTTATGAGTACATGCCATTAGGATCTTTGGAAAATCATTTGCATGATCTTTCACCTGGTAGAAAACCACTTGATTGGAACACAAGAATGAAAATAGCAGCTGGTGCAGCTAGAGGTTTAGAGTATTTGCATGATAAAATGAAGCCTCCTGTCATATACCGTGACCTGAAATGCTCCAACATTTTGTTAGGCGAGGGATATCATGCCAAGTTATCTGATTTTGGTTTGGCAAAAGTAGGCCCAAGTGGTGATAAGACCCATGTATCAACAAGAGTTATGGGAACATATGGGTACTGTGCCCCAGATTATGCTATGACCGGTCAATTAACATTCAAGTCTGATATTTATAGCTTTGGAGTTGTTCTTTTGGAGATCATAACGGGCAGGAAGGCGATTGACCATACAAAACCTGCTAAAGAACAAAATCTAGTTGCATGGGCAAGGCCTTTATTCAAAGACCGAAGAAGATTCTCGGAGATGGTTGATCCATTGCTTAGAGGTCAATTTCCAGTGAGGGGTTTGTACCAAGCTCTTGCTATTGCTGCTATGTGTGTTCAAGAACAGCCTAATATGCGGCCTGGTATAGCTGACGTTGTTACAGCTCTAAATTACCTTGCATCCCAGAAATATGATCCTCAAAGTCATCCAGCGCAAAGCTCTAGAAAAGGTATACCTTCTCCAAGAGTGAGAAGTGACGCTAATCATAAACGTGTTGTTAGTAATGGTTCTGAGATAGAATATAATCCCGAAGTTCATTCAGTACAAAGTTCTTCTAAAGTTTCATCTCCGAGGGTGAGAGGTGACATACATAGACGAAATGTTAGTAATGGTTCTGAGACAGATAGCTCTGGAAGTTAG 1338 0.4081 MSCFGWATKSSKKSNSSNNEKPSNVTAVEKVKVDLNVSGKKEDNSKSDQLSLDVKNLNLKEESNEEKVNNYRAQTFTFDELAAATRNFRSDCFLGEGGFGKVYKGHIEKINQVVAIKQLDPHGLQGIREFVVEVLTLSMADHPNLVKLIGFCAEREQRLLVYEYMPLGSLENHLHDLSPGRKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHAKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDHTKPAKEQNLVAWARPLFKDRRRFSEMVDPLLRGQFPVRGLYQALAIAAMCVQEQPNMRPGIADVVTALNYLASQKYDPQSHPAQSSRKGIPSPRVRSDANHKRVVSNGSEIEYNPEVHSVQSSSKVSSPRVRGDIHRRNVSNGSETDSSGS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2242 445 SMART serkin_6 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2242 445 SUPERFAMILY Protein kinase-like (PK-like) 74 378 IPR011009 -
Apr2g2242 445 MobiDBLite consensus disorder prediction 370 385 - -
Apr2g2242 445 MobiDBLite consensus disorder prediction 406 423 - -
Apr2g2242 445 MobiDBLite consensus disorder prediction 1 27 - -
Apr2g2242 445 PANTHER OS07G0668900 PROTEIN 1 396 - -
Apr2g2242 445 MobiDBLite consensus disorder prediction 1 25 - -
Apr2g2242 445 Pfam Protein tyrosine and serine/threonine kinase 93 361 IPR001245 GO:0004672|GO:0006468
Apr2g2242 445 ProSiteProfiles Protein kinase domain profile. 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2242 445 CDD STKc_IRAK 94 363 - -
Apr2g2242 445 Gene3D Phosphorylase Kinase; domain 1 57 164 - -
Apr2g2242 445 Coils Coil 54 74 - -
Apr2g2242 445 MobiDBLite consensus disorder prediction 370 445 - -
Apr2g2242 445 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Apr2g2242 445 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 396 - -
Apr2g2242 445 Gene3D Transferase(Phosphotransferase) domain 1 165 383 - -
Apr2g2242 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2242 Apr-Chr2 27554010 27557684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2242 54 367 Glycoside Hydrolase AT3G07070 63.694 1.54e-150 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Apr2g2242 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2242 - - gmx:100794680 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2242 2 27554010 27557684 Apr2g2242 2 27554010 27557684 ECH
Apr2g2242 2 27554010 27557684 Apr3g1417 3 28735098 28739434 ECH
Apr4g1846 4 25584463 25587612 Apr2g2242 2 27554010 27557684 ECH
Apr2g2242 2 27554010 27557684 Apr3g1417 3 28735098 28739434 PCT