Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2238 ATGTTGGATCTTAATCTGAATGCCGATTCGACTCAGAACGGTGACTCGCTGGTGATGTTGGACAAATTTCCCGAAGCTTCTTCGGGGACCTCGAATTCCTCCGTCGTGAATGCGGAGGGGTCAAGCAACGGAGGAGGCGACGAGGACTCGTGTTCCACACGCGCTGGCGGCGTCTTCACCTTCAAATTTGGTATCCTTAAGGTGGAAGGTGAGAACGACGTCGTCGCGACTAAGGAGCTGTTCCCGGTGAGTGCCGGGAATTGGCAGGGGCAGAGTTCGACGTCGTCGTTTCCAGCGAGGAAGAGTTTGGTGGATCTCTCTCTGGATCATCATCGAGGCGAAAAGGGAGAGACGAAGGTAGTTCAGGTTCAGCAACAGCCTCAGGTGAAGAAGAGTAGGAGGGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGGAGGACAGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACCGCTCATGCCGCTGCTAGGGCCTATGATCGAGCTGCTATCAAGTTCAGGGGACTTGATGCTGACATCAATTTCAACCTCGTTGATTATGAGGAGGATATGAAACAGATGAAGAATCTTTCCAAGGAGGAATTTGTGCACATACTCCGTCGCCACAGTACCGGTTTCTCAAGGGGGAGTTCGAAATACCGAGGAGTGACCCTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTCGGCAAAAAGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAGGCAGTGACTAACTTTGAGCAGAGTACATATGAAAGCGAAATGAAACCCGAAGCTATTAATGAAGGTGGCAATCACAATCTTGACCTCAATTTGGGCATAGCGACCCCAGGACATGGTCCCAAGGAAAACGTGGGGCATCTTCCGTTCCACTCCATCCCTCACAACATGCATCCTGGAAGAAGTTCAAAGATAGACACTAATGTTAATTCAGTTATTGGTGCTCCGTCTTTGAAAAGGCTGGTCGAAAATGAAGAGCGTCCTTCTCTTTGGAATGCCACATATTCCAGTTTCTTTCCCAATGTGGAAAGAGCAGAGAGAATTGGGATAGATCCTTCAAAAGGACTCTCCAATTGGGCGTGGCAAACGCACGGCCAGCTTACTGCCACCCCAATACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACGTTCCCATCAACTGCAATCTTTCCAACAAAATCTGTGAACTCAGTTCCCCAGAGCCTCTGTTTCACTTCATCTGGCGCACACGTTAGCAATGCGCCTCCATACTATTACCAGGTGAACTCCCCACAGGCACCATCGTAG 1389 0.4982 MLDLNLNADSTQNGDSLVMLDKFPEASSGTSNSSVVNAEGSSNGGGDEDSCSTRAGGVFTFKFGILKVEGENDVVATKELFPVSAGNWQGQSSTSSFPARKSLVDLSLDHHRGEKGETKVVQVQQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDMKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEQSTYESEMKPEAINEGGNHNLDLNLGIATPGHGPKENVGHLPFHSIPHNMHPGRSSKIDTNVNSVIGAPSLKRLVENEERPSLWNATYSSFFPNVERAERIGIDPSKGLSNWAWQTHGQLTATPIPPFSTAASSGFSISATFPSTAIFPTKSVNSVPQSLCFTSSGAHVSNAPPYYYQVNSPQAPS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2238 462 MobiDBLite consensus disorder prediction 25 49 - -
Apr2g2238 462 SMART rav1_2 234 282 IPR001471 GO:0003700|GO:0006355
Apr2g2238 462 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Apr2g2238 462 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Apr2g2238 462 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 448 - -
Apr2g2238 462 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 448 - -
Apr2g2238 462 SUPERFAMILY DNA-binding domain 233 277 IPR016177 GO:0003677
Apr2g2238 462 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Apr2g2238 462 Gene3D AP2/ERF domain 233 277 IPR036955 GO:0003700|GO:0006355
Apr2g2238 462 SUPERFAMILY DNA-binding domain 141 198 IPR016177 GO:0003677
Apr2g2238 462 MobiDBLite consensus disorder prediction 24 51 - -
Apr2g2238 462 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Apr2g2238 462 CDD AP2 233 278 IPR001471 GO:0003700|GO:0006355
Apr2g2238 462 CDD AP2 142 197 IPR001471 GO:0003700|GO:0006355
Apr2g2238 462 MobiDBLite consensus disorder prediction 114 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2238 Apr-Chr2 27493318 27497524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2238 1 423 AP2-EREBP Transcription Factor Family AT5G60120 48.276 6.13e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr2g2238 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2238 K09284 - gmx:100777102 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2238 2 27493318 27497524 Apr2g2238 2 27493318 27497524 ECH
Apr2g2238 2 27493318 27497524 Apr3g1413 3 28629443 28633794 ECH
Apr2g2238 2 27493318 27497524 Apr3g1413 3 28629443 28633794 PCT