Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2230 ATGGAGAGTGACTCAAACACCCCAACTTCCTCACCCACATTTTCTCATTCTTCTAATTCCCCGTCATCTTCACCTCCCCAAGTTGTTATGAGCCCTTGTGCTGCTTGCAAAATTCTGAGGCGAAGATGTGCTGAGAAATGTGTGTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCACTGCACACCGAGTCTTTGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCGGAGTCTCAAAGAGCTGATGCAGTGGCTAGCATGGTTTACGAGGCTGGGGCAAGAATAAGAGACCCAGTATATGGATGTGCAGGTGCAATTTGCCAGCTGCAAAAGCAAGTCAATGAGCTTCAAGCACAATTAGCAAAGGCACAAGCTGAGCTTGTAAACATGCAATTCCAACAAGCCAACCTCGTGACTCTAATTTGCATGGAAATGGCACAAACTCCACAGGAATCACCACAACAATCAGTGAACAACTTCATTTCAAGTCCTTCCCACAGCACTGGCTATCAAAACAATCTTAACTTCTTAGAGGACACCACCAACCTAAACTCCATGTGGGAGCCTCTTTGGACATGA 594 0.463 MESDSNTPTSSPTFSHSSNSPSSSPPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQFQQANLVTLICMEMAQTPQESPQQSVNNFISSPSHSTGYQNNLNFLEDTTNLNSMWEPLWT* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2230 197 Pfam Lateral organ boundaries (LOB) domain 32 129 IPR004883 -
Apr2g2230 197 ProSiteProfiles LOB domain profile. 31 132 IPR004883 -
Apr2g2230 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 194 - -
Apr2g2230 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 15 194 - -
Apr2g2230 197 Coils Coil 111 138 - -
Apr2g2230 197 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2230 Apr-Chr2 27403574 27405133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2230 27 197 AS2 family AT1G07900 68.966 7.64e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr2g2230 LOB 3.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2230 - - gmx:100819336 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2230 2 27403574 27405133 Apr2g2230 2 27403574 27405133 ECH
Apr2g2230 2 27403574 27405133 Apr3g1400 3 28451164 28453223 PCT