Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2226 ATGGATTTGGTATCCAGTTGCAAGGAAAAATTGCAATGTTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTCGATAGGATATTATCTATTCTCTCTGATGAACAAGTTTCCAAAATGTGGGCTAAGAAGAATGCTGTTGGAAAAGAACAGGTGGCAAAATTTGTGGATGACATATATAGAAAATTGCAGGCAGCGGGGGCTATTGATCTAGCATCCAAGGGACAGGGTGCCTCAGATTGCAGTAGTTTGAAAATTAAACGTGAAGTTGATGATTCCTTTCAAGCTGATACGAAGATTCGCTGTCTGTGTGGAAGTTTATTGGAAACAGAGTCATTGATAAAGTGTGAAGATACAAGATGTAGTGTGTCACAGCATATCAACTGTGTTATTATTCCAGAAAAACCTATGGAAGGAATCCCACCAGTTCCTGATAAATTCTATTGTGAAATATGTCGACTCACTCGTGCCGACCCGTTTTGGGTTTCAGTCGCACACCCTTTGTTTCCTGTGAAGTTGACTACAACCAATATTCCAACTGATGGAACCAACCCAGTACAAAGTGTGGAAAGAACATTTCAACTCACTAGAGCAAACAAGGAGTTGGTATCAAAATCAGAATATGATGTTCAGGTCTGGTGTATGCTTCTGAACGACAAAGTCCCATTCAGAATGCAATGGCCGCAATATACAGATCTACAGGTTAATGGTCTTCCTGTTCGTGCAATTAACAGACCTGGGTCGCAATTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATTTTCTGTTTAGGGGTTCGTATTGTTAGAAGGCGCAATGTGCAACAGATCCTAGACATGATTCCAAAAGTGTCTGATGGTGAGCGTTTTGAAGATGCTCTTGCACGGGTCTGTTGTTGTGTTGGGGGTGGAAATGCAAATGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTTAGTATCAATCTCCGCTGTCCAATGAGTGGTTCAAGAATGAAGATTGCGGGAAGATTCAAACCCTGTGTTCACATGGGCTGTTTTGATCTTGAGGTTTTTGTGGAAATGAATCAACGATCAAGGAAGTGGCAGTGCCCCACGTGCCTGAAAAATTATGCTTTGGAGAACATCATTATTGACCCTTATTTCAATTGTATCACTTCTATGATGAAAAATTGTGGAGAAGAGATCACAGAGGTTGAGGTGAAACCTGATGGTTATTGGCGTGTTAAGGCCAAGAGTGAAAGTGAATGCCGGGAGTTAGGTAATCTTGCTCAATGGCACTGTCCTGATGGATCCCTTGCTGTTTCTACTGATGCAGAAGTCAAGAGAGTGGAAAATTTAAAACTCAAAGAGGAAGGTGTTTCAGAGAGTCCTATTGGTTTAAGACTTGGCATCAGGAAAAATAGTAATGGAGTTTGGGAAGTCAACAAACCTGAGAACACAAACACCTCTTCTGGTAATAGATTGAATGGTGATTTTGGAAATGATGAACATGTTGTTATTCCCATGAGTAGCAGTGCTACTGGAAGTGGCCGGGATGATGATGATCCTAGTGTAAATCAAGGTGGTGGTGGGCATATTGATTATTCTACTACCAATGGGATTGAGATGGATTCACTGTGTCACAATAATATTGATTCAGCTTATGGATATACTGTTCACAACACTTCTGCTCCCATGGGTGATGCAGAAGTTATTGTTCTTACTGATTCAGAAGACGACAATGATATATTGATGTCTTCAACAATTGGGTACAAAAATAATCCAACTGGTGCTGCAGTTGATGTTTACTCAATGCCACAGCCCATAATTATTGATTCATATACAGAAGATCACAATCTAGGTGGAAATTCATGCTTGGGAGTTTTTAATAATCCTAATGAAGATGATTTTGGGATGCCCTCCCTCTGGCCTTTGCATTCTGGAACTCAGCCAGGTTCAGGATTCCAATTATTTAGTTCTGATGTGGATGTGTCAGATGCATTGGTCCATTTGCAGCATGGTGATATTAATTGCTCCTCGTCACTGCATGGTTATACATTGGCTCCAGATACTGCTTTGGGATCTAGTACTCTCATACCAGACTCCTCTTCAGGTCGACCTGATGCTGATTTGAATGATGGCTTGGTTGACAATCCATTGGCATTCGCCGGAGAAGATCCCTCTCTTCAAATTTTTCTCCCTACTAGACCAGCAGATTCATCTATGCAGCCTGAACTGAGAGATCACGCAGACATGTCCAATGGTGTCTGCACTGAGGATTGGATCTCTCTTAGACTTGGAGATGGTGCTGGTGGAAGTAATGGTGATGCATCCGGTACAAATGGGTTGAATTCCAGACCGCAAGTTACACCCAGAGAAAATGCCACAGAGTCTTTGACAGATACTGCTTCTTTGCTTCTTGGTATGAATGATGTTAGATCTGAGAAGGCAAGCAGGCAAAGGACAGATAGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAGAAATGGAAGTTGATGTGGTATGA 2622 0.4172 MDLVSSCKEKLQCFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSKMWAKKNAVGKEQVAKFVDDIYRKLQAAGAIDLASKGQGASDCSSLKIKREVDDSFQADTKIRCLCGSLLETESLIKCEDTRCSVSQHINCVIIPEKPMEGIPPVPDKFYCEICRLTRADPFWVSVAHPLFPVKLTTTNIPTDGTNPVQSVERTFQLTRANKELVSKSEYDVQVWCMLLNDKVPFRMQWPQYTDLQVNGLPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVRRRNVQQILDMIPKVSDGERFEDALARVCCCVGGGNANDDADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPTCLKNYALENIIIDPYFNCITSMMKNCGEEITEVEVKPDGYWRVKAKSESECRELGNLAQWHCPDGSLAVSTDAEVKRVENLKLKEEGVSESPIGLRLGIRKNSNGVWEVNKPENTNTSSGNRLNGDFGNDEHVVIPMSSSATGSGRDDDDPSVNQGGGGHIDYSTTNGIEMDSLCHNNIDSAYGYTVHNTSAPMGDAEVIVLTDSEDDNDILMSSTIGYKNNPTGAAVDVYSMPQPIIIDSYTEDHNLGGNSCLGVFNNPNEDDFGMPSLWPLHSGTQPGSGFQLFSSDVDVSDALVHLQHGDINCSSSLHGYTLAPDTALGSSTLIPDSSSGRPDADLNDGLVDNPLAFAGEDPSLQIFLPTRPADSSMQPELRDHADMSNGVCTEDWISLRLGDGAGGSNGDASGTNGLNSRPQVTPRENATESLTDTASLLLGMNDVRSEKASRQRTDSPFSFPRQKRSEMEVDVV* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2226 873 MobiDBLite consensus disorder prediction 730 750 - -
Apr2g2226 873 MobiDBLite consensus disorder prediction 512 529 - -
Apr2g2226 873 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Apr2g2226 873 MobiDBLite consensus disorder prediction 846 873 - -
Apr2g2226 873 SUPERFAMILY FYVE/PHD zinc finger 108 169 IPR011011 -
Apr2g2226 873 MobiDBLite consensus disorder prediction 539 553 - -
Apr2g2226 873 MobiDBLite consensus disorder prediction 512 569 - -
Apr2g2226 873 Gene3D SAP domain 1 74 IPR036361 -
Apr2g2226 873 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 813 - -
Apr2g2226 873 MobiDBLite consensus disorder prediction 800 873 - -
Apr2g2226 873 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Apr2g2226 873 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Apr2g2226 873 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 813 - -
Apr2g2226 873 SMART sap_9 11 45 IPR003034 -
Apr2g2226 873 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Apr2g2226 873 SMART PHD_3 114 166 IPR001965 -
Apr2g2226 873 Pfam SAP domain 15 42 IPR003034 -
Apr2g2226 873 MobiDBLite consensus disorder prediction 806 839 - -
Apr2g2226 873 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Apr2g2226 873 SUPERFAMILY SAP domain 1 64 IPR036361 -
Apr2g2226 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Apr2g2226 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 447 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2226 Apr-Chr2 27362919 27376073 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2226 - K22403 gmx:100811996 1403.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2226 2 27362919 27376073 Apr2g2226 2 27362919 27376073 ECH
Apr2g2226 2 27362919 27376073 Apr3g1390 3 28359254 28398604 PCT