Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2225 ATGGAAATTGATCTGAACGATGATGCTGGGACTGAGGTTGAAAAAAATGCATCTTGCAATGGGGTCTGTGAGAAAGGTGTTACTTGTGCTTGCTCTTTGTCCTCTTCAACTTCTGGTTCCTCCTCTGCACGTATGTCGTCTTCATATCTTGAGCTATGGCACGCTTGTGCTGGCCCTCAAACCTCTCTTCCAAAGAAAGGGAATGTGGTGGTGTATTTTCCACAGGGTCACTTGGAACAAGCTGCATCTTTCTCTGCCTTTACACCAATGGAGATGCCCACTTATGATCTTCAGCCACAGATCTTTTGTAGAGTTGTCAATGTTCAACTACTTGCCAATAAGGAGAATGATGAGGTTTATACTCAGGTTACTTTGCTTCCCCAGACAGAGTTAGCAGGGATGTATTTGGAGGGCAAAGAGCTTGAGGAATTGGAAGAAGATGAAGAGGGGAATGGAACAACACCTACAAAATCAACCCCTCACATGTTCTGCAAAACGCTTACTGCCTCTGACACCAGCACTCATGGGGGGTTCTCTGTTCCTCGCAGAGCAGCTGAGGACTGTTTTCCTCCTTTGGACTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCATATTTACCGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCTGTGCTCTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGGGCTGCGCGACCAAAAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAGTTGTTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCTGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGATTTTGTTGTGTCCTACCAAAAATATGTCAAAAGCATCAAGAATCCTGTGACCATTGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTACTAGTGGTGTAGTGACTGGAATGAGTGATATGGATCCCTACAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATTAATCATCAAGATAGAGTATCTCCATGGGAGATAGATCCTTCTGTATCTCTCCCTCCCATGAGCATTCAATCCTCCCGAAGGCTGAAGAAACTGCGGCCAGGTCTGCAGGCTGCTTCACCCAGTCACCTCATCACTGGTGTGGCAGCAGGAGGCAGTGGGTTTATGGACTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCTAATCTTCTGTCAACTGGAATGAGAAAGATTGCTGCTGCTGAGCTTATGAAGGTTCACCCTTCTAGTTATGCAGGTTTCACGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGCCCTTTGAGATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGCAAACCCAGTGTCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAACCTAACTTTCACTCTTTAGGACCAGAAGTTGTTCAAACTGCATACTTTCCTTATAGTGACATTCACAAAACTGGTCAAGGTAGCAGCATGTTGTGCTCTAAACCCACCAATTTCCAACGAGAGAATCTACCATTTCACACTCCTTCCACTCAATCAGGGATCATGAGAAATGAAGTTGGACGATCAGATGTCACAATCCCAAATGAGCAGAGGCTGCAGGACAATATTTCCAGTGCTGCTTCGTTAGGGGCAAACATGAGGATTTCAAATGAAGACAATTTCGAGGGGAAGGTAAATGCTTGTAAGCTATTTGGGTTTCCCTTATATGGGGAAACTACCACCCAAAATTTACAGAACTCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGATCGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAAGAGATCCTAGTAAGGGATGGAGAATCCTGTATACTGACAGTGAAAATGACATTATGGTTGTGGGGGATGACCCATGGCATGAGTTCTGCGATGTGGTATCCAAGATTCATATACATACACAAGAAGAAGTGGAGAAAATGACAATTGGGATGACCAATGATGATACCCAGAGTTGTTTGGAACAGGCACCGCTGATAATGGAGGCTTCGAAGTCTTCCTCCGTGGGCCAGCCAGATTCTTCTCCAACAGTGGTTAGAATCTAG 2421 0.4428 MEIDLNDDAGTEVEKNASCNGVCEKGVTCACSLSSSTSGSSSARMSSSYLELWHACAGPQTSLPKKGNVVVYFPQGHLEQAASFSAFTPMEMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQTELAGMYLEGKELEELEEDEEGNGTTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPKNGLPESIVGSQSCYPNFLSSVANAISAKSMFHVFYSPRASHADFVVSYQKYVKSIKNPVTIGTRFKMKFEMDESPERRCTSGVVTGMSDMDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEIDPSVSLPPMSIQSSRRLKKLRPGLQAASPSHLITGVAAGGSGFMDFEESVRSPKVLQGQENTGFMSLYYGCDTVTKQPEFEIRSPSHPNLLSTGMRKIAAAELMKVHPSSYAGFTETNRFPRVLQGQEICPLRSLTGKVDLNLGAWGKPSVSCTNYNLHQATKPNFHSLGPEVVQTAYFPYSDIHKTGQGSSMLCSKPTNFQRENLPFHTPSTQSGIMRNEVGRSDVTIPNEQRLQDNISSAASLGANMRISNEDNFEGKVNACKLFGFPLYGETTTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLIELERLFSMEGLLRDPSKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIHTQEEVEKMTIGMTNDDTQSCLEQAPLIMEASKSSSVGQPDSSPTVVRI* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2225 806 PANTHER AUXIN RESPONSE FACTOR 9 794 - -
Apr2g2225 806 Gene3D - 674 767 - -
Apr2g2225 806 ProSiteProfiles B3 DNA-binding domain profile. 163 265 IPR003340 GO:0003677
Apr2g2225 806 MobiDBLite consensus disorder prediction 142 162 - -
Apr2g2225 806 Pfam Auxin response factor 289 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr2g2225 806 Pfam B3 DNA binding domain 163 264 IPR003340 GO:0003677
Apr2g2225 806 ProSiteProfiles PB1 domain profile. 678 760 IPR000270 GO:0005515
Apr2g2225 806 SMART B3_2 163 265 IPR003340 GO:0003677
Apr2g2225 806 Gene3D - 161 265 IPR015300 -
Apr2g2225 806 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 794 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr2g2225 806 CDD B3_DNA 161 263 IPR003340 GO:0003677
Apr2g2225 806 Gene3D - 327 399 - -
Apr2g2225 806 SUPERFAMILY DNA-binding pseudobarrel domain 154 274 IPR015300 -
Apr2g2225 806 SUPERFAMILY CAD & PB1 domains 681 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2225 Apr-Chr2 27355311 27361369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2225 46 806 B3 DNA Binding Superfamily AT5G60450 60.417 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr2g2225 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2225 - - gmx:100812909 1413.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2225 2 27355311 27361369 Apr2g2225 2 27355311 27361369 ECH
Apr2g2225 2 27355311 27361369 Apr3g1387 3 28339776 28346413 PCT