Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2221 ATGATGTCTGAAGAAGCAATTTCTGTTCCTTCCAATTCCAACCTCAGAGGCTCCATGGTTCAAATTCATGACCCAAACTCCAACTCAAACCCTAATCCTAACCCTAATTCAAATCCATCAGTTAAGAGAAAAAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGATTGCTCTGTCGCCAAAGTCACTGATGGCAACGAACCGATTCATCTGCGAAGTGTGCAACAAGGGTTTCCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCATGGAAGCTGCGGCAGAGATCGAAGCAAGAGGTGGTAAGGAAGAAGGTGTACGTGTGTCCAGAAAAAAGCTGCGTGCACCATGACCCTTGTAGAGCCCTTGGAGACCTCACTGGGATAAAGAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATACGCAGTTCAATCTGACTGGAAGGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGTACAATATTCTCCAGGAAGGACAGCTTCGTGACGCATAGAGCCTTTTGTGATGCCATGGCGGAACAAAGTGCGAGAATGACTTCACTTCCAGGAGTTTTATCAAACTTTGGAAACGATATTCTGATCAACGCTCAAGCACCGAGAATGATGCCTCAGGGTTTACAATTACAAGGGTTTCAGCAAGAATTTGGTGGGCCAGGCCCAGAACCATTCATGGGAAATTTTACGGATGCAGACCATGACCAGAAGCTAAGGTTACCACTATGGTTGGACCAGGCCAATCCTCAACTTCATCACCCTCTAAACGTTCCAAGCAACTCAAGTGTGTTCTCATCAGGAACTGGAACAACCATGCCTGAAGCAAACATGTTTGGGACATCGCCACAGGCACAGTGGTTGAATTACCGTCACCCAGAAGCATCATTTACAAGTGCTAATGTGTCTATGCCACATGTGCTGAAGCTAGAACAAGAAGAAAACAAAAGGGACTTGTCGCATAGCGTGAGCTCTTTGTACCCACATGGAGGCCCAAGTCACATGTCAGCTACTCCATTATTTCAGAAAGCAGCCCAAATCGAATCTTCGAGGATCAATGGTAACTCACCTTTCGACACCTCAAACAATGCCTTTGGCTTGTTGGGCTCGAATATCTCAAGCACTTCCATCAACAACCGTAATAATAACGTTGTTGAAATTCAAAAAATTTTCAAGCATGCAAGTCACGGTGACAGCTTCAACCATATGGTGAATTCCCAAGCAAGCACCAACGTTGGAGGTGGGTTTTCATTGCCTAGTACGAAGGGTTTGGATCATACGGTAATGCCACGTAACAATGAAGAGTGGCAGTGGGGACAAGCACCAATAATGGACGAGCAAGTGCATTCAAGTTCAAACAATCAAGACCACTTGACCAAAGACTTCATGGGCGTTGGAGATGATTCATTAAGCAGAACATTGCAGCAAAATCAGTTCATGAACCTGCAAAGCCAGTTCCGTGAACATTACTGA 1548 0.4599 MMSEEAISVPSNSNLRGSMVQIHDPNSNSNPNPNPNSNPSVKRKRSLPGTPDPDAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKQEVVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMAEQSARMTSLPGVLSNFGNDILINAQAPRMMPQGLQLQGFQQEFGGPGPEPFMGNFTDADHDQKLRLPLWLDQANPQLHHPLNVPSNSSVFSSGTGTTMPEANMFGTSPQAQWLNYRHPEASFTSANVSMPHVLKLEQEENKRDLSHSVSSLYPHGGPSHMSATPLFQKAAQIESSRINGNSPFDTSNNAFGLLGSNISSTSINNRNNNVVEIQKIFKHASHGDSFNHMVNSQASTNVGGGFSLPSTKGLDHTVMPRNNEEWQWGQAPIMDEQVHSSSNNQDHLTKDFMGVGDDSLSRTLQQNQFMNLQSQFREHY* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2221 515 MobiDBLite consensus disorder prediction 1 56 - -
Apr2g2221 515 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Apr2g2221 515 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 502 - -
Apr2g2221 515 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Apr2g2221 515 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Apr2g2221 515 SMART c2h2final6 71 93 IPR013087 -
Apr2g2221 515 SMART c2h2final6 148 168 IPR013087 -
Apr2g2221 515 SMART c2h2final6 113 143 IPR013087 -
Apr2g2221 515 Gene3D Classic Zinc Finger 126 206 - -
Apr2g2221 515 MobiDBLite consensus disorder prediction 1 44 - -
Apr2g2221 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Apr2g2221 515 Gene3D Classic Zinc Finger 50 123 - -
Apr2g2221 515 PANTHER ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 1 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2221 Apr-Chr2 27318906 27321971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2221 41 247 IDZ Gene Family AT3G45260 72.249 1.33e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g2221 zf-C2H2_jaz 8.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2221 K25870 - gmx:100811687 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2221 2 27318906 27321971 Apr2g2221 2 27318906 27321971 ECH
Apr2g2221 2 27318906 27321971 Apr3g1384 3 28301462 28304606 PCT