Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2212 ATGGGGAATATGGGAAGCAGTGGAAGGCAACAGAGAAGGAGGAGGAACCCAACACCACAAGGGATAAACTACTCCTTTGCACCTCACCCTCCTCACTACCCCAATACCCTTCTTCCTCCTTATCATCAATACCCACAATCGTTTTCTTCTACCACCACTTTGGTTGATACCCAATTCACTTGTGAGCTTAAGCATGAGAAAACTATCTCCATCAGGAATGATGTGAACATCAAGAAGGAGACACTTCACATGGAGCCTGATCAACACAACCCTGGCGATTTTCTTGTTGCTTTCAACTTTGATGCCACTGCTTCTGGATGCATTACAGTAATGTTTTTTGCCAAGGAAACTTTAGATGGTAAGCTGATAGCAGTGAAGAAAAGCTTGCTGAAACAAATTTCAATGCCTTTTCAGCAAGGTCTTTGTCAGAAATTTAGACAACCTTCTGGAACTGGGATTGAAATCTCAATGTTAGAGGAGATAAAACTAACAAAAGAAGGTGAAACAGTTTATCCTCTTGTGCTGAAGGCTGAGGCTCGACCATTAAACCATTATGTAAATGATGGAAACCCATTTTCTCAAATTACTTTGGCTAGTTTTGAGAAGAGAGAGAAAGGTGAGTACAAAGTCCGAGTAATGAAACAGATTCTCTGGGTTAGTGGGAAGAGGTATGAACTGCATGAGATATATGGCATTGGGAATGCTAGTGATGTTGATGGACATGAAGTTGGTGGACATTGTGTCATTTGTCTGTCAGAGCCACGAGATATAACTGTGCTCCCTTGCAGACACATGTGCATGTGCAGTGGGTGTGCCAGCCTTCTGAAAGTTCATACAGCCAAATGCCCCATTTGTCGGCATCCAATTGAGAGGCTTTTGGAAATTAAAGTAAATGATGGATTTGGTGACTGA 912 0.4221 MGNMGSSGRQQRRRRNPTPQGINYSFAPHPPHYPNTLLPPYHQYPQSFSSTTTLVDTQFTCELKHEKTISIRNDVNIKKETLHMEPDQHNPGDFLVAFNFDATASGCITVMFFAKETLDGKLIAVKKSLLKQISMPFQQGLCQKFRQPSGTGIEISMLEEIKLTKEGETVYPLVLKAEARPLNHYVNDGNPFSQITLASFEKREKGEYKVRVMKQILWVSGKRYELHEIYGIGNASDVDGHEVGGHCVICLSEPRDITVLPCRHMCMCSGCASLLKVHTAKCPICRHPIERLLEIKVNDGFGD* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2212 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 296 IPR013083 -
Apr2g2212 303 PANTHER - 1 302 - -
Apr2g2212 303 SMART ring_2 247 285 IPR001841 -
Apr2g2212 303 Pfam Zinc finger, C3HC4 type (RING finger) 246 291 - -
Apr2g2212 303 MobiDBLite consensus disorder prediction 1 23 - -
Apr2g2212 303 PIRSF SBP1_RNase_bind 2 83 IPR017066 -
Apr2g2212 303 PIRSF SBP1_RNase_bind 228 297 IPR017066 -
Apr2g2212 303 PANTHER MAHOGUNIN 1 302 IPR045194 GO:0061630
Apr2g2212 303 ProSiteProfiles Zinc finger RING-type profile. 247 286 IPR001841 -
Apr2g2212 303 SUPERFAMILY RING/U-box 246 292 - -
Apr2g2212 303 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2212 Apr-Chr2 27266104 27268959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2212 57 266 C3H Transcription Factor Family AT3G09770 53.125 2.44e-72 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2212 - - gmx:100816136 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2212 2 27266104 27268959 Apr2g2212 2 27266104 27268959 ECH