Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2211 ATGAGTGCTGAGCAAAAACAAGATGCACCTTCGTGCAAGCCAACACTTTCTCTTCCAGTTCGCAAGGTTGATGATCCAATAGAGGCAACTGATGAGACTTCACATGTTAATCATTGGAAGCAACAGAATCTTCACCTGGAAATACCCTTCACTACATTAGAAGAGCCTTCTCAGGATTTTGTTGGAATAAGGATGCCACTCACACCAAGTCCTACTCCAACTCATAAGAGAGTGAATTTTCTTGTCACTTCTCGTTCTGTTGATGCTCCAATCAGAAATCACCCAGGCCCTTCAGCTTCAAGAGCCAAATCTTCCATAAGAAACATCTTACCAAAGCTCAACTTCAGGAATCGAACATCATCTGATATTGAAAAGGCTATAACTGGAACTCCAGAAGGTTCCTGTTCAGGCCTTCAAGAAAAGTCTTCAATCTCAAGATCAGTGTCTCTCACAAAAATATTCACTCCTAAGATTAAGAGGGCATCATCATTACCTGTAGAAGAAATTGCTCTTGCCAACACAGATTCTGCTCTAGCTGGAATTGGACGAGAGACCCAGGGGATGATAGCTCGCTCTCGTTCAGTGCCTGTCAATGACAAAGATAAAGGAATAAGGAGAATGGATTCGGTTTTCCGCGTTATTCCTTCCACCCCTCTAGTAAAGAAAGTGAACGAAACAACAGAGGATTCAGAAAATGGTGACGGTGAAGATATTGCTGAAGAGGAAGCCGTGTGTAGAATTTGTCTGGTTGGTCTATGTGAAGGAGGTGAGACATTCAAGCTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCATCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTTAGGAACCTCCCTGTCACTCTCTTAAGGATCCGTAGTGTTCAAACGCAGAATACTGGAGCAAGGTCCCCGGAAGATGATTACAGGATTTGGCAGGAACTCCCAGTGCTTGTTATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATGTCTCTTCCATTTTCCTGTGTATTGGGTCTACTCTCCGCAGTGACATCATCAACTATGGTTAAGAACAGGTTCATCTGGATCTACGCATCTGTCCAATTTGCTTTGGTGGTTCTCTTCGCTCATATATTTTACTCCTTGGTTGGTAAGCATGCAGTTTTGTCAATCCTTCTAGCAACATTTGCTGGGTTTGGTGTAGTGATGAGTGGAAGTTCAATTCTTGTTGAGTTTTCAAGATGGAGAAGAAGATGGCAGGCTTTATCCGAGCAGAGTCAAAGCTGA 1356 0.4329 MSAEQKQDAPSCKPTLSLPVRKVDDPIEATDETSHVNHWKQQNLHLEIPFTTLEEPSQDFVGIRMPLTPSPTPTHKRVNFLVTSRSVDAPIRNHPGPSASRAKSSIRNILPKLNFRNRTSSDIEKAITGTPEGSCSGLQEKSSISRSVSLTKIFTPKIKRASSLPVEEIALANTDSALAGIGRETQGMIARSRSVPVNDKDKGIRRMDSVFRVIPSTPLVKKVNETTEDSENGDGEDIAEEEAVCRICLVGLCEGGETFKLECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGARSPEDDYRIWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFMSLPFSCVLGLLSAVTSSTMVKNRFIWIYASVQFALVVLFAHIFYSLVGKHAVLSILLATFAGFGVVMSGSSILVEFSRWRRRWQALSEQSQS* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2211 451 SMART ringv_2 244 293 IPR011016 GO:0008270
Apr2g2211 451 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 31 449 - -
Apr2g2211 451 ProSiteProfiles Zinc finger RING-CH-type profile. 237 299 IPR011016 GO:0008270
Apr2g2211 451 PANTHER OS02G0165000 PROTEIN 31 449 - -
Apr2g2211 451 CDD RING_CH-C4HC3_MARCH 245 293 - -
Apr2g2211 451 Pfam RING-variant domain 245 292 IPR011016 GO:0008270
Apr2g2211 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 300 IPR013083 -
Apr2g2211 451 SUPERFAMILY RING/U-box 241 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2211 Apr-Chr2 27255437 27259656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2211 234 299 C3H Transcription Factor Family AT2G37950 47.761 4.78e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2211 - - gmx:100815599 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2211 2 27255437 27259656 Apr2g2211 2 27255437 27259656 ECH
Apr2g2211 2 27255437 27259656 Apr3g1368 3 28168916 28174827 PCT