Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2205 ATGGCCAAAGACGTTGAGCAGGTCGCAGAGCAAGGAGAATACTCCGCCAAGGACTACCATGACCCACCTCCGGCGCCGTTGATCGACGTAGAAGAGTTGACAAAGTGGTCTTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACCCTTCTCTTCCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGATACCACCATTAGCGGTAACACCGAATGTGACGGCGTTGGGATTTTGGGCATAGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATCTCCGGAGGACACATCAACCCTGCAGTGACATTTGGGTTGTTCCTGGGGCGTAAGGTGTCGCTTATAAGGGCGTTGTTGTACATGGTAGCACAGTGTGCTGGTGCAATCTGTGGTGCTGGGTTGGCAAAGGGGTTCCAAAAATCTTACTACAATAGGTATGGAGGAGGAGTTAACCTTGTGAGCGATGGGTACAACAAAGGAACCGCTTTGGGTGCTGAGATTATTGGTACCTTCGTCCTTGTTTACACTGTTTTCTCCGCCACTGATCCTAAGAGGAGCGCTAGAGACTCTCATGTTCCTGTGTTGGCACCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGGTACAATTCCTGTCACTGGTACTGGCATTAACCCGGCAAGGAGTTTTGGACCAGCTGTGATCTACAACCAGGACAAAGCATGGGACGACCAATGGATTTATTGGGTTGGACCATTTGTTGGAGCTGCGGCGGCTGCGTTTTACCATCAATATATTCTTAGAGCTGCTGCAATCAAAGCTCTTGGATCCTTCCGGAGCAACGCTTAA 864 0.4977 MAKDVEQVAEQGEYSAKDYHDPPPAPLIDVEELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTTISGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCAGAICGAGLAKGFQKSYYNRYGGGVNLVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLGTIPVTGTGINPARSFGPAVIYNQDKAWDDQWIYWVGPFVGAAAAAFYHQYILRAAAIKALGSFRSNA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2205 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr2g2205 287 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr2g2205 287 SUPERFAMILY Aquaporin-like 31 273 IPR023271 -
Apr2g2205 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr2g2205 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr2g2205 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr2g2205 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr2g2205 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr2g2205 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr2g2205 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Apr2g2205 287 PANTHER AQUAPORIN PIP2-7 1 287 - -
Apr2g2205 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Apr2g2205 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr2g2205 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2205 Apr-Chr2 27223398 27225145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2205 1 285 Major Intrinsic Protein MIP AT5G60660 78.947 1.11e-168 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2205 K09872 - gmx:732604 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2205 2 27223398 27225145 Apr2g2205 2 27223398 27225145 ECH
Apr2g2205 2 27223398 27225145 Apr3g1362 3 28137679 28139658 ECH
Apr4g0193 4 1565611 1567223 Apr2g2205 2 27223398 27225145 ECH
Apr2g2205 2 27223398 27225145 Apr3g1362 3 28137679 28139658 PCT