Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2203 ATGCCGCCAAAGTTTGACCCCTCGCAGGTCGTCGACGTTTACGTCCGAGTCACCGGCGGCGAAGTGGGCGCGGCGAGTTCACTCGCTCCGAAGATCGGTCCGCTCGGTCTATCCCCAAAGAAGATCGGAGAAGACATTGCCAAGGAGACTGCGAAGGATTGGAAGGGCTTGAGAGTAACGGTGAAGCTGACGGTGCAGAACCGTCAGGCTAAGGTGACGGTGGTTCCGTCTGCGGCAGCCCTGGTGATCAAGGCCTTGAAGGAGCCAGAACGGGACCGTAAGAAGACGAAGAACATCAAGCACAGTGGCAACATATCCCTCGATGACGTGATCGAGATCGCTAAGGTTATGAGGCATAGGTCGATGGCTAAGGACCTTAGTGGCACTGTGAAGGAAATCCTTGGTACCTGCGTGTCTGTTGGTTGCACAGTTGACGGAAAGGATCCTAAGGACTTGCAACAGGAGATCACTGACGGAGACGTTGAAATTCCTCACGATTGA 501 0.5469 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHSGNISLDDVIEIAKVMRHRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPHD* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2203 166 Gene3D - 1 81 IPR036796 -
Apr2g2203 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Apr2g2203 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Apr2g2203 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Apr2g2203 166 PANTHER 60S RIBOSOMAL PROTEIN L12-3 1 166 - -
Apr2g2203 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Apr2g2203 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Apr2g2203 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Apr2g2203 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Apr2g2203 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Apr2g2203 166 Gene3D - 82 164 IPR036769 -
Apr2g2203 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2203 Apr-Chr2 27216550 27217199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2203 1 166 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 89.157 1.26e-107 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2203 K02870 - jre:108985811 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2203 2 27216550 27217199 Apr2g2203 2 27216550 27217199 ECH
Apr2g2203 2 27216550 27217199 Apr3g1361 3 28121636 28122886 ECH