Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2198 ATGAAGGAAGGTGAAAAGAGCTTGGATCCTCAACTATGGCACGCATGTGCGGGTAGCATGGTTCAGATGCCTCTTGTGAACTCTAAAGTGTTCTACTTTCCACAAGGCCATGCTGAACACGCACACTGCAACGTTGATTTCGGAGCTTCCTTGAGGATTCCACCATTCATTCTCTGCCGCGTGGCAGCTGTGAAATTCTTAGCTGACCCAGAAACCGACGAAGTCTTTGCAAGGATAAGGTTGGTTCCTCTGAGGAATTCAGAGCTTGATTATGAAGATGGTGATGCCCTTGATGGTAATGCTTCACAGGGTTCTGAAAAGCCCGCGTCTTTTGCCAAGACGCTGACTCAATCTGATGCCAACAATGGTGGGGGTTTCTCTGTTCCAAGGTACTGTGCTGAAACCATTTTTCCTCGGCTTGATTACTCGGCGGAACCACCGGTTCAGACGGTGATCGCGAAGGATGTTCACGGTGAGGTTTGGAAGTTCAGGCATATTTATAGGGGCACGCCACGGCGACACTTGCTAACAACCGGATGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCAGGGGATTCCATTGTTTTTCTGAGGGCTGAAAATGGTGATCTTTGTGTTGGGATTCGGAGGGCTAAGAGGGGGATTGTCGGTGGGTCGGAGGGGCCATCTGGGTGGAGCTCTGGTGGTGGAAGTTGTGGGCTTGGGCCTTATGGGGCCTTCTCTGCTTTTCTGAGGGAGGAGAGCAAGGTTTTGAGGAATGGTTGTGGGAACTCGGGTTTGAGTCCCGGTGGTGGTGGTGGTGGTGTGAGTGGAAGGGCTAAAGTGAGTGCTGAGTCCGTGAGGGAGGCTGTGACATTGGCTGCTACAAATCAGGCATTTGAAGTTGTTTATTATCCGAGAGCAAGTACTCCTGAGTTTTGCATTAGGACTTCGGCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTTAAGATGCCTTTTGAAACCGAGGATTCTTCTAGGATAAGCTGGTTCATGGGGACCATAGCTTCTGTTCAGGTTGTTGATCCTGTCCGTTGGCCTAATTCCCCTTGGCGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTACATAATGTGAAGCGCGTAAGCCCATGGTTGGTTGAGTTGGTATCAAACGTGCCAATCATCCATCTTACACCCTTCTCTCCACCAAGAAAGAAGCTTAGGTTTCCACAACATCCAGACTTTCCCCTCGATGTTCAGTTTCCGATACCAACATTTTCGGGCAACCCCGTTGGGTCTAGCACTAGCAGCCCCTTGTGTTGTCTTTCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCACAAATTGGAATATCTTTGTCAGATCTTCACCTTAACAATAAACTGCAGTTGGGGTTGCTTCCAACTAATGTCCACCACCTTGATTTACACACTGGGATTTCTAATGGCAACACCACCAACCATGATAAGAGTAAAGAAAGTTTATCATGCTTGCTAACCATGGGAAATTCACACAAGAATTTGGAAAAATCTGATAATGCAAAGAGACACCAATTTTGGCTTTTTGGTCAGCCAATACTCACCGAGCAACAAATTTTTAGAAGCTCTTCTAGTGATATGTCGTCTCAAAATTGCACTGGGAAAAATTCACCTTGTGATGAGAGCAAGGACAAGAAAAACGGGTTCTTTAGTGACTCCCAATCTTCAATTTCACCTTCTACTGCTGAGTTTTCTTGGCAACTTGGTTTGGACAATGGTCATTGCAAGGTTTTCATGGAGTCAGAAGACGTGGGACGGACCCTAGACCTGTCACGGCTTGGTTCTTATGAAGAATTGTACATGAGACTGGCCAAAATGTTTGGAATAGAAAGGTCTGAGATGTTGAGCCACGTACTCTACCGCGACGCAACAGGTGCTATTAAGCAAACTGGAGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTGATGGATTCAGGCAACAAAGATAACAGAAGGGTGTGGATTACAGGAACACGGAATGCTGAACGTGGATTGGATGCATCAAATAAGGCGGGTCCTCTGAGCATATTTGCATAA 2124 0.4708 MKEGEKSLDPQLWHACAGSMVQMPLVNSKVFYFPQGHAEHAHCNVDFGASLRIPPFILCRVAAVKFLADPETDEVFARIRLVPLRNSELDYEDGDALDGNASQGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIVGGSEGPSGWSSGGGSCGLGPYGAFSAFLREESKVLRNGCGNSGLSPGGGGGGVSGRAKVSAESVREAVTLAATNQAFEVVYYPRASTPEFCIRTSAVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPVRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPIIHLTPFSPPRKKLRFPQHPDFPLDVQFPIPTFSGNPVGSSTSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNNKLQLGLLPTNVHHLDLHTGISNGNTTNHDKSKESLSCLLTMGNSHKNLEKSDNAKRHQFWLFGQPILTEQQIFRSSSSDMSSQNCTGKNSPCDESKDKKNGFFSDSQSSISPSTAEFSWQLGLDNGHCKVFMESEDVGRTLDLSRLGSYEELYMRLAKMFGIERSEMLSHVLYRDATGAIKQTGEEPFSEFMKTAKRLTILMDSGNKDNRRVWITGTRNAERGLDASNKAGPLSIFA* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2198 707 Gene3D - 109 213 IPR015300 -
Apr2g2198 707 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr2g2198 707 PANTHER AUXIN RESPONSE FACTOR 2 684 - -
Apr2g2198 707 Gene3D - 322 394 - -
Apr2g2198 707 ProSiteProfiles PB1 domain profile. 595 675 IPR000270 GO:0005515
Apr2g2198 707 Gene3D - 594 678 - -
Apr2g2198 707 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Apr2g2198 707 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Apr2g2198 707 MobiDBLite consensus disorder prediction 548 581 - -
Apr2g2198 707 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
Apr2g2198 707 SMART B3_2 111 213 IPR003340 GO:0003677
Apr2g2198 707 CDD B3_DNA 110 211 IPR003340 GO:0003677
Apr2g2198 707 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2198 Apr-Chr2 27160873 27164628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2198 1 677 B3 DNA Binding Superfamily AT4G30080 59.942 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr2g2198 B3 4.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2198 - - gmx:100778135 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2198 2 27160873 27164628 Apr2g2198 2 27160873 27164628 ECH
Apr2g2198 2 27160873 27164628 Apr3g1355 3 28061870 28066976 ECH
Apr4g0195 4 1593587 1597982 Apr2g2198 2 27160873 27164628 ECH
Apr8g0487 8 4196663 4200727 Apr2g2198 2 27160873 27164628 ECH
Apr2g2198 2 27160873 27164628 Apr3g1355 3 28061870 28066976 PCT