Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2197 ATGTCTGAGGATATTGCTAAAATGAAGGACTCTTGGTTTTTTGACAATAATTTTAATGGTCTGTCGGATGAGATTTTTGATGATGTCATCAAGTTTTTTGATTTTCCACTGGAAGATGTGGAAACTAATGCTGCGGAAGAAGACTGGGATGCTCAGTTAAAATCCCTTGACGACCCTCGTTTTGATGTTTTTTCGGTATCATCAGCTGGGCTGTGCGCCAAAACTCAAGATGAAAATCCCCAACTTGGGATGGGTTTCTCTGCTTCTTGTAATGGGATTTCCCCAATAAAACAGCTGGCAAAAGCTCCTGGACCAACATACGAAAAAACCATTTCCCACCAGACTGTCTCTTTCAATGGAAAAGATTTGCATCAATTCCAAACCTACAGCCCAGTTTCGGTTTTTGAAAGCAGTAGTTCTTCCTCAGTTGAGAATTCCAACTTCGATGTACCTGTCATCCTGAGAAAGCGTGCTCGAAGTAAACGCATGCGTCCTTCAAGCTCCAATCCTCTATTCTCAACACCTTTCGTCCTCAGTTCACCAGATTTGCTGAAACATCAAAGGACCACTGCCTCTGAATCAAACTTTGAAAAGGATGTTGCTGGCAAACTATCAGACAAAGTAAAAAGGCTGAGGAAAAAGGACATGTCCCTGCTATCAGGTGATGTTGGGACGACGAAATCGTCGTTACTGGAGTCAGTTGCCTTCAGAAAGTGCATGCATTGCGAGGTGACAAAAACCCCGCAATGGAGAGAGGGACCTATGGGTCCCAAGACACTATGCAATGCTTGTGGTGTTCGATACAGGTCTGGCCGCCTCTTTCCCGAATACCGGCCTGCAGCTAGCCCGACATTTGTAGCATCACTGCACTCAAACTGTCACAAGAAGGTGGTAGAGATGAGAAGCAGAACCATGCATGAGGGTGTTAGGGGTTCAGTGTTGGCTTCATCAAATCTCTCTGGAAATTCTGTAGGATAA 978 0.4458 MSEDIAKMKDSWFFDNNFNGLSDEIFDDVIKFFDFPLEDVETNAAEEDWDAQLKSLDDPRFDVFSVSSAGLCAKTQDENPQLGMGFSASCNGISPIKQLAKAPGPTYEKTISHQTVSFNGKDLHQFQTYSPVSVFESSSSSSVENSNFDVPVILRKRARSKRMRPSSSNPLFSTPFVLSSPDLLKHQRTTASESNFEKDVAGKLSDKVKRLRKKDMSLLSGDVGTTKSSLLESVAFRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRTMHEGVRGSVLASSNLSGNSVG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2197 325 MobiDBLite consensus disorder prediction 306 325 - -
Apr2g2197 325 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Apr2g2197 325 MobiDBLite consensus disorder prediction 311 325 - -
Apr2g2197 325 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Apr2g2197 325 Gene3D - 235 283 IPR013088 GO:0006355|GO:0008270
Apr2g2197 325 PANTHER GATA TRANSCRIPTION FACTOR 26 304 - -
Apr2g2197 325 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Apr2g2197 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 294 - -
Apr2g2197 325 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Apr2g2197 325 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Apr2g2197 325 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 26 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2197 Apr-Chr2 27149669 27153882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2197 15 303 C2C2-Gata Transcription Factor Family AT1G08010 36.482 4.26e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr2g2197 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2197 - - aprc:113853859 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2197 2 27149669 27153882 Apr2g2197 2 27149669 27153882 ECH
Apr2g2197 2 27149669 27153882 Apr3g1354 3 28049576 28052928 ECH
Apr2g2197 2 27149669 27153882 Apr3g1354 3 28049576 28052928 PCT