Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2178 ATGTCTCATCAAGGCGAATCATCGGACCCGAAATCGGGGAAGAAGGACTACTCAACCGCGATTCTGGAACGGAAGAAGTCACCGAACAGGCTTGTTGTTGATGAAGCCGTCAACGATGATAACTCCGTCGTCACCATGCACCCCCAAACCATGGAAAAGCTTCAGCTTTTCCGAGGGGACACTATCCTCATCAAGGGGAAGAAACGGAGGGATACAATTTGTATAGCCCTTGCTGATGATAACTGTGAGGAGCCTAAGATAAGGATGAACAAAGTTGTGAGATCAAATTTGAGGGTTCGGCTTGGAGATGTTGTGTCTGTGCATCAGTGCCCTGATGTCAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGCGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTATTTCTTGGAGGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGGGGAGGGATGAGAAGTGTAGAATTCAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTTGTTGCTCCAGACACTGAAATATTTTGCGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAAAGGCTGGATGAAGTTGGGTATGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAAATTCGTGAATTGGTAGAGCTTCCTTTGAGGCATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTACTTTATGGACCCCCTGGTTCTGGGAAGACATTAATAGCCAGAGCTGTTGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAACGGACCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTCGAAGAAGCTGAAAAGAATGCACCATCCATCATCTTTATTGATGAAATTGATTCAATTGCACCCAAGCGAGAGAAGACACACGGGGAAGTTGAAAGAAGAATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGTGCTCATGTTATTGTGATTGGAGCTACTAATCGTCCAAACAGCATTGATCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTCTGATGATGTTGATTTGGAGAGAATTGCAAAAGATACTCATGGGTATGTTGGTGCTGATCTTGCTGCCCTATGCACTGAAGCTGCTTTGCAATGCATTAGGGAGAAGATGGATGTCATTGACTTGGAGGATGAGACTATTGATGCTGAAGTACTTAATTCTATGGCTGTCTCAAATGAGCATTTCCAGACTGCACTTGGAACAAGCAACCCATCAGCCTTACGTGAAACTGTTGTTGAGGTGCCTAATGTCAGTTGGGATGACATTGGAGGCCTTGAGAATGTCAAGCGTGAACTGCAAGAGACTGTTCAATATCCTGTTGAGCACCCAGAAAAGTTTGAGAAATTTGGCATGTCACCATCAAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCCAACTTCATCAGTGTGAAAGGTCCAGAATTGCTCACGATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGGCAATCGGCTCCATGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCCACTCAGGTTAGGGGAAGTAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTCAATCAACTTCTGACTGAAATGGATGGCATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACTAACAGACCTGACATCATTGATCCAGCACTTCTTCGGCCAGGCCGTCTGGATCAATTGATCTATATTCCTCTTCCTGATGAGGATTCCCGTCATCAAATATTCAAGGCCTGCTTGAGGAAGTCACCTATCTCGAAAGATGTTGATTTGAGAGCTTTGGCTAGGTATACTCAAGGGTTCAGTGGTGCTGATATTACTGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAAACATAGAAAAGGACATAGAGCGAGAGAGAAGGAGGAGGGAAAACCCAGAGGCAATGGATGAAGACACTGTAGACGAGGAAGTTGCGGAGATCAAGGCTGCTCATTTTGAGGAGTCAATGAAGTATGCACGTAGGAGTGTTAGTGATGCTGATATACGCAAATACCAAGCATTTGCTCAGACCTTACAGCAATCCAGGGGATTTGGAAGTGAATTTAGGTTTCCTGAGACTGGAAATAGAAATACTGGATCTGACCCTTTTGCAACTTCTGCTGCTGGGGCTGATGAAGATGATCTCTATAGTTAG 2424 0.4394 MSHQGESSDPKSGKKDYSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGDTILIKGKKRRDTICIALADDNCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQVRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRENPEAMDEDTVDEEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPETGNRNTGSDPFATSAAGADEDDLYS* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2178 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 766 IPR027417 -
Apr2g2178 807 SMART CDC48_N_2 30 113 IPR003338 -
Apr2g2178 807 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Apr2g2178 807 Gene3D - 113 209 - -
Apr2g2178 807 PANTHER AAA-FAMILY ATPASE 5 783 - -
Apr2g2178 807 Pfam Cell division protein 48 (CDC48), domain 2 132 193 IPR004201 -
Apr2g2178 807 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Apr2g2178 807 Pfam ATPase family associated with various cellular activities (AAA) 518 652 IPR003959 GO:0005524|GO:0016887
Apr2g2178 807 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 783 - -
Apr2g2178 807 SMART CDC48_2_2 130 196 IPR004201 -
Apr2g2178 807 Gene3D - 8 112 - -
Apr2g2178 807 SUPERFAMILY ADC-like 26 110 IPR009010 -
Apr2g2178 807 MobiDBLite consensus disorder prediction 772 794 - -
Apr2g2178 807 Gene3D - 468 652 IPR027417 -
Apr2g2178 807 MobiDBLite consensus disorder prediction 1 21 - -
Apr2g2178 807 Gene3D - 376 467 - -
Apr2g2178 807 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 769 IPR005938 GO:0016787
Apr2g2178 807 Gene3D - 656 765 - -
Apr2g2178 807 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Apr2g2178 807 CDD AAA 484 652 - -
Apr2g2178 807 SMART AAA_5 241 377 IPR003593 -
Apr2g2178 807 SMART AAA_5 514 654 IPR003593 -
Apr2g2178 807 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Apr2g2178 807 Gene3D - 210 374 IPR027417 -
Apr2g2178 807 ProSitePatterns AAA-protein family signature. 622 640 IPR003960 GO:0005524|GO:0016887
Apr2g2178 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Apr2g2178 807 CDD AAA 211 374 - -
Apr2g2178 807 MobiDBLite consensus disorder prediction 772 807 - -
Apr2g2178 807 Pfam AAA+ lid domain 674 714 IPR041569 -
Apr2g2178 807 Pfam AAA+ lid domain 397 439 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2178 Apr-Chr2 26892009 26896908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2178 447 711 Calmodulin-binding Proteins AT3G56690 47.925 6.35e-79 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2178 K13525 - gmx:100783508 1538.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2178 2 26892009 26896908 Apr2g2178 2 26892009 26896908 ECH