Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2172 ATGCAGAGATCCGGATATGGTTCCGACAGTATATACAGGTCTCTGAGACCCACTTTGATGTTACCCAAAAGCCCTAACATCAACCTCGTTTCGAATCTCTTCAACAGAGTCTCTTCTTTTCACTCCAAAACTGCACTCATTGATGCTGACGCATCCCAAACCCTCTCTTTTGCTCAGTTGAAGTCCTTAACCGTTAAACTCTCCCACGCTTTTCTCCGCCTCGGCCTCACCAAAAACGACGTCGTTCTCTTCTTCGCCCCAAACGACATTCGTTTCATTGTCTCCTTCCTCGCTGTCGTTTCACTCGGCGCCGTCGTTTCCACCGTTAACCCTTCCTACACCGCCGCTGAAGTTTCCAAGCAGGTTAAGGACTCGAACCCCAAACTTGTCGTCACCGTCGCCGAACTATGGGACAAGGTCAGGTCCTTGAACCTTCCCGCCGTGTTCCTCCGTTCCTCCACGCCGTTATACGACAACGTCATTAGCTTCGACGCGTTGCTCGAACTCGCCGGGTCGCCGACCGAGTTTCCGACGGTTAATGTTGGACAGAGTGACACGGCGGCGCTTCTGTATTCCTCCGGCACGACGGGGTTGAGCAAGGGCGTGATTCTCACCCACGGGAATTTCATTGCTGCGTCTTTGATGATTGCGATGGACGATGATTTGGCGGGGGAGATGTTCAGTGTGTTCCTCTGTGTTCTGCCAATGTTTCACGTGTTTGGGTTAACGGTGATTTGCTATACGCAGCTTCAGAGGGGTAGTACGGTGGTGTCTTTGAAGAGGTTTGAGTTTGAAGTGGTTTTGAAGATGATTGAGAAGTATAAGGTGACGCATTTGTGGATTGTGCCTCCTATTTTGCTTGCTCTGGCCAAACATGGGTTGGTTGAAAAGTATGATCTTTCCTCATTGAAGCATATTGGGTCTGGTGCTGCTCCTCTAGGGAAAGAGTTGATGGAGGAGGGTGCCAGGCGTTTCCCTCATGCCATTGTTTCTCAAGGCTATGGTATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAACACGAGGATGGGGATTCGGCATACCGGTTCAACTGGAATGCTTGTTGCGGGAGTGGAAGCTCAGATAGTGAGTGTGGATACACTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGTTATCACAACAATCCACAGGCCACAAGATTGACAATAGATAAAAAAGGATGGGTTCATACAGGAGATCTTGGATATTTCGATGAGAATGGACAACTTTTTGTTGTTGACCGTATCAAAGAGTTGATCAAATATAAAGGTTATCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCGGATGCTAAAGCTGGTGAAGTTCCAGTTGCTTATGTCGTCCGTTCACCCAATAGTTCACTGACTGAAGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGGGTGACATTCATCAATTCTGTTCCAAAGACAGCATCGGGAAAAGTTCTCCGAAGAGAGCTTATTGAGAAAGCAAAATCGAAAATGTAA 1617 0.4762 MQRSGYGSDSIYRSLRPTLMLPKSPNINLVSNLFNRVSSFHSKTALIDADASQTLSFAQLKSLTVKLSHAFLRLGLTKNDVVLFFAPNDIRFIVSFLAVVSLGAVVSTVNPSYTAAEVSKQVKDSNPKLVVTVAELWDKVRSLNLPAVFLRSSTPLYDNVISFDALLELAGSPTEFPTVNVGQSDTAALLYSSGTTGLSKGVILTHGNFIAASLMIAMDDDLAGEMFSVFLCVLPMFHVFGLTVICYTQLQRGSTVVSLKRFEFEVVLKMIEKYKVTHLWIVPPILLALAKHGLVEKYDLSSLKHIGSGAAPLGKELMEEGARRFPHAIVSQGYGMTETCGIVSVENTRMGIRHTGSTGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTIDKKGWVHTGDLGYFDENGQLFVVDRIKELIKYKGYQVAPAELEGLLVSHPEILDAVVIPYPDAKAGEVPVAYVVRSPNSSLTEEDVQKFIANQVAPFKRLRRVTFINSVPKTASGKVLRRELIEKAKSKM* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2172 538 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Apr2g2172 538 CDD 4CL 21 530 - -
Apr2g2172 538 Gene3D - 436 538 IPR045851 -
Apr2g2172 538 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Apr2g2172 538 Pfam AMP-binding enzyme 36 440 IPR000873 -
Apr2g2172 538 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 537 - -
Apr2g2172 538 Gene3D - 9 435 IPR042099 -
Apr2g2172 538 SUPERFAMILY Acetyl-CoA synthetase-like 23 536 - -
Apr2g2172 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2172 Apr-Chr2 26841782 26846203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2172 1 538 Monolignol Biosynthesis Gene Families AT4G05160 66.176 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2172 K01904 - gmx:100797843 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2172 2 26841782 26846203 Apr2g2172 2 26841782 26846203 ECH
Apr2g2172 2 26841782 26846203 Apr3g1326 3 27709313 27713083 PCT