Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2171 ATGGGAAGAGCTCCTTGTTGTGACAAGGCAAATGTGAAGAGAGGACCATGGTCACCAGAAGAAGACTCGAAGTTAAAGGAGTACATAGAGAAGCATGGAACTGGAGGGAATTGGATCGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCTAACATTAAGCACGGGGAATTCTCCGACGAGGAAGATAGAATAATTTGTAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAATTGCCAGGGAGGACTGACAATGATATAAAGAACTATTGGAACACCAAACTGAAGAGGAAACTCATGGGGTTGCTTCCTTCGGCCCATCAAAGACTACCACCATACCAATCCTCTCCTCAAAACACACCATCATTTCCTCCTCACTCACTATCCTCCTCAATCTACAGAGACTACTACAACAACTCTTATCACACCACCCCAGCACAAGCGACAACCTCGTCTTTCACATGCCTTGAACCAATTTCCATTCCATCAAGTAATTACACAAGCACAAGCTGCACAACGACCTCCATCTCTTTACCCTTTTACCAAAACCAAGAGTCCTTGGTTAGTGTCATTAGTCCCATGCAGTATTACCCTATCACAGACAGCCCCATGCTTGTGTTTGGAAGTGAAGGAAGTTGCAGCTCCTCTGATGGAAGCTGTAGTCAAGTTAGCCATGGGAGAGAGATCAAACAAGAAGAAATGGGTCTTCAGAATTTCATGTATGAAGATCAACACATGAACAAAATTATGCTTAGTCAAGGGCAAGAGGGTATGAACCAATGGGCAGAAAAGGCAAATGGATGCTATTTTCAAACGCAAACAGCATTGGATTATGAATTAGAGGTTATTAAGCAAATGATTAGTAGTAATAGTAATAATGGGTACTTGAGTATTGATGAAAACAAGACGGAGGAGAAGGGCATGTACTACAACTGGTGA 993 0.426 MGRAPCCDKANVKRGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPSAHQRLPPYQSSPQNTPSFPPHSLSSSIYRDYYNNSYHTTPAQATTSSFTCLEPISIPSSNYTSTSCTTTSISLPFYQNQESLVSVISPMQYYPITDSPMLVFGSEGSCSSSDGSCSQVSHGREIKQEEMGLQNFMYEDQHMNKIMLSQGQEGMNQWAEKANGCYFQTQTALDYELEVIKQMISSNSNNGYLSIDENKTEEKGMYYNW* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2171 330 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Apr2g2171 330 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr2g2171 330 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr2g2171 330 CDD SANT 16 62 IPR001005 -
Apr2g2171 330 PANTHER TRANSCRIPTION FACTOR RAX3 1 312 - -
Apr2g2171 330 SMART sant 13 64 IPR001005 -
Apr2g2171 330 SMART sant 67 115 IPR001005 -
Apr2g2171 330 Gene3D - 70 137 - -
Apr2g2171 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Apr2g2171 330 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr2g2171 330 CDD SANT 70 113 IPR001005 -
Apr2g2171 330 Gene3D - 7 68 - -
Apr2g2171 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr2g2171 330 PANTHER OS09G0431300 PROTEIN 1 312 - -
Apr2g2171 330 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2171 Apr-Chr2 26834199 26835779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2171 1 119 MYB Transcription Factor Family AT5G57620 89.076 9.08e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g2171 Myb_DNA-binding 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2171 K09422 - gmx:100796382 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2171 2 26834199 26835779 Apr2g2171 2 26834199 26835779 ECH
Apr2g2171 2 26834199 26835779 Apr3g1324 3 27687409 27688950 PCT