Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2163 ATGGATGTTCACCAAGACACACTGGCTTACATCAATGATTTTGAGCTGCACGACTACATTGAAGATCCTAACTTTGATCAGTTCATCAATTTGATTCGAGGGGAGAATGAAGAAGCCGTCTGTGACTTCGTTTCTGACCTTATCAATGATCCCTTCATGGATAATCAGCTCCTTTCATGTCATGCAAACCCTTTTGAACAGAATGATAATAATGCTGTGAATGTGTATGATCCAAGCTCTACACTTAGCTCCTTCTCTTGCTTTGATGAAGTGGTTAAGGGAGAAGGAGAAGAAGAACACGATGGAGAGCATTCTTCTGCAACAACAACAACTACTGATGCCAAACCGAGACTAAAAACTGATAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTATGAATTGCGTTCCTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTGGCATACGTGCATCAGCTTCAAGCACAAGCCAAGAAGCTAAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCCGAAAAATACCAAGGATCTATAAATAACCTCAAAAATGTTAAGGGCACCCATAATAGTCATCCAACCTGCAAGAAGATCATGCAGGTGAACATGTTTCAAGTTGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCCTCGTTGTACAGGGCTCTCGAGTCTCTTGCAGGTTTTAATGTTCAGAATTCAAACCTTGCTACAGTTTCTGACAGTTTTATACTTACATTTACATTGAATGTAAAAGGATATGAACCAGAAATTAACTTGCCAAATTTGAAGCTATGGGTGACAGGTGCTCTAATGAACCAAGGATTTGAAATTGTAGCATCTTTTCCTGCTTGA 933 0.4084 MDVHQDTLAYINDFELHDYIEDPNFDQFINLIRGENEEAVCDFVSDLINDPFMDNQLLSCHANPFEQNDNNAVNVYDPSSTLSSFSCFDEVVKGEGEEEHDGEHSSATTTTTDAKPRLKTDRSKTLISERRRRGRMKEKLYELRSLVPNITKMDKASIIGDAVAYVHQLQAQAKKLKAEVAGLEASLLVSEKYQGSINNLKNVKGTHNSHPTCKKIMQVNMFQVEERGYYAKIVCNKGEGVAASLYRALESLAGFNVQNSNLATVSDSFILTFTLNVKGYEPEINLPNLKLWVTGALMNQGFEIVASFPA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2163 310 MobiDBLite consensus disorder prediction 93 118 - -
Apr2g2163 310 Pfam Helix-loop-helix DNA-binding domain 127 170 IPR011598 GO:0046983
Apr2g2163 310 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 306 - -
Apr2g2163 310 SMART finulus 126 175 IPR011598 GO:0046983
Apr2g2163 310 Coils Coil 166 186 - -
Apr2g2163 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 194 IPR036638 GO:0046983
Apr2g2163 310 Gene3D - 111 186 IPR036638 GO:0046983
Apr2g2163 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Apr2g2163 310 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2163 Apr-Chr2 26749899 26751849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2163 1 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.681 1.24e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g2163 HLH 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2163 - - gmx:100805451 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2163 2 26749899 26751849 Apr2g2163 2 26749899 26751849 ECH
Apr2g2163 2 26749899 26751849 Apr3g1312 3 27575554 27577112 PCT