Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2160 ATGTTGTCAGAAATGGACATGGGTACGGAGGAACTCGTGCTGGGGTCTTGTAACCACGACACGACCCAGATAGCAAAAGGGAAACGCACGAAGCGGCGCGTGAGGCCTTTGTCTCCTTGTGCCACCGCCATGACTTCTAGCTGTTCGAGTGGCGGTGGGTCGTTTTCATCTACCACCTTTGAAGGAACTGACCAAGAAGAAGAAGACATGGCTAATTGTTTGATTCTTCTAGCACAAGGAAGAGGAGGGGATGATTCTGATCACAAACACCACCAACAACAACTTGAACATGTTCATGGTGTTGATGTTAAGACTAACAGCAATATGGGTAGCACCAAAATCAATTTTTATGTTTATGAGTGCAAAACATGTAACCGAACATTCCCTTCTTTTCAAGCACTAGGTGGCCACAGAGCAAGTCACAAGAAACCCAAGGTAATAGAGGGAAATCGCAAGTCTTTGATTGCTTGTGATTTTGAAGAAGCTAAACAAAGCCATGTTAGGATTTCCCTTCAATTGGGGTGTGGTAATAGTAATAATAGAGGTGGCAACAAGTCCAAGATTCACGAGTGTTCCATTTGTGGGTCAGAATTCACTTCGGGGCAAGCACTGGGTGGTCACATGAGGAGGCACAGAGCTTCTAACAATAATGGTGCTGTTCACAACGCTTTTGATGCTGGTGTTGAAGTTAAGCCTCGGAATGTTCTAGAATTGGATCTTAATCTTCCGGCGCCGGAGGATGATGTCCGGGAGTCTAAGTTTCAGTTTCCGGCGAATCAAAGTTCTATGGTGCTGTCGGCTGCTCCGGCTTTGGTGGGTTGCCATTATTAG 831 0.4597 MLSEMDMGTEELVLGSCNHDTTQIAKGKRTKRRVRPLSPCATAMTSSCSSGGGSFSSTTFEGTDQEEEDMANCLILLAQGRGGDDSDHKHHQQQLEHVHGVDVKTNSNMGSTKINFYVYECKTCNRTFPSFQALGGHRASHKKPKVIEGNRKSLIACDFEEAKQSHVRISLQLGCGNSNNRGGNKSKIHECSICGSEFTSGQALGGHMRRHRASNNNGAVHNAFDAGVEVKPRNVLELDLNLPAPEDDVRESKFQFPANQSSMVLSAAPALVGCHY* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2160 276 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Apr2g2160 276 SUPERFAMILY beta-beta-alpha zinc fingers 118 211 IPR036236 -
Apr2g2160 276 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Apr2g2160 276 Pfam C2H2-type zinc finger 189 213 - -
Apr2g2160 276 Pfam C2H2-type zinc finger 118 144 - -
Apr2g2160 276 Gene3D Classic Zinc Finger 116 211 - -
Apr2g2160 276 SMART c2h2final6 189 211 IPR013087 -
Apr2g2160 276 SMART c2h2final6 119 141 IPR013087 -
Apr2g2160 276 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 5 276 - -
Apr2g2160 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Apr2g2160 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Apr2g2160 276 PANTHER ZINC FINGER PROTEIN ZAT5 5 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2160 Apr-Chr2 26727490 26728902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2160 5 276 C2H2 Transcription Factor Family AT2G28200 42.395 1.05e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g2160 zf-C2H2_6 1.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2160 - - aprc:113855228 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2160 2 26727490 26728902 Apr2g2160 2 26727490 26728902 ECH
Apr2g2160 2 26727490 26728902 Apr8g1843 8 28871441 28872430 ECH
Apr2g2160 2 26727490 26728902 Apr3g1310 3 27559012 27560326 ECH
Apr4g0236 4 1994679 1995515 Apr2g2160 2 26727490 26728902 ECH
Apr8g0541 8 4786773 4787642 Apr2g2160 2 26727490 26728902 ECH
Apr2g2160 2 26727490 26728902 Apr3g1310 3 27559012 27560326 PCT