Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2159 ATGATTTCAAGGGCCACATCAGGTTTCCAAAGTGTGCATCAAGGGATTCAGATGTTCCCTGACCCCGACGATTTGGTGTCTCCCTCTATGGAAATAAACTCTGCCTCAGCAGGTTCACACTCAAGTTCCCTTCTGTTCAATCTCTCTGTGCTCAAGGACAAGCTTAGTCAAGTGCAGACCCTGGTTGGTGTTATTCTCTCACCAAATCAAAGCCTACCCGAGTCAACATCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAGATCCTTGTGACTGCCACATCAATGATGTTCACTTGCCAACAAATGGCTCTCGCTAGTAATATCCCACCAGGTACAACTACTACTTGCACCAACCAATTGCATAGCCAAGACAAGTTGCCTAACTCAAATTTTTGCACCAATAGAAGTGTGCTTAGTAACATAGGTGCAGATATTAGAGGTCAGGAGGGTTTATTTTCTAGTACTGAATCAGAGGCACTGGATTGGTTTGGTGAAAGCTATAATAATAATGATAATAATAATAATAATAATAACAATGATAATAGTTTTAACTGTAAGATTAAGGAGGATGATACAGGCGTTGCAATTAGTGAAAACAATAATAGTAGGGGAGGATTGTCTCCGAGGGATGAACCTAATGAAGGTTATAATAGAGGGATTTCAACAAAGAATAGTGATATTGTTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACACACTATTGCCAAGTTTGTGGTAAAGGGTTTAAGCGTGACGCAAATTTGAGGATGCACATGAGAGCTCATGGAGATGAGTACAAGACTAATGCTGCTTTGAGTAACCCAATCAAGAATAGGGGAAGCTTGGAAGGGGGTAGGGAGTGTTTGATGAGTATGAAACCCAAGAAATATTCATGTCCCCAAGAAGGGTGTAGGTGGAACCAAAAGCATGCCAAGTTCCAACCATTGAAATCTATGATTTGTGCAAAGAATCACTACAAGAGAAGCCACTGCCCCAAGATGTACGTGTGCAAGAGGTGCAGCCAGAAGCAGTTCTCGGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGTGATCTCAAGTGGCAGTGTTCGTGTGGCACTACGTTTTCTAGGAAAGACAAGCTTATGGGTCATGTTGCTTTGTTCGTGGGGCACCAACCAGCCATCAGCAATGGCTTGTCATACTCGGGTAAAGTGGAACAGCACACATTGCAAATGCAGATTGATGGTTGTTCAAGATAA 1257 0.428 MISRATSGFQSVHQGIQMFPDPDDLVSPSMEINSASAGSHSSSLLFNLSVLKDKLSQVQTLVGVILSPNQSLPESTSMAISSMNSTIQEILVTATSMMFTCQQMALASNIPPGTTTTCTNQLHSQDKLPNSNFCTNRSVLSNIGADIRGQEGLFSSTESEALDWFGESYNNNDNNNNNNNNDNSFNCKIKEDDTGVAISENNNSRGGLSPRDEPNEGYNRGISTKNSDIVELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNRGSLEGGRECLMSMKPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCSQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHQPAISNGLSYSGKVEQHTLQMQIDGCSR* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2159 418 Gene3D Classic Zinc Finger 336 386 - -
Apr2g2159 418 SUPERFAMILY beta-beta-alpha zinc fingers 241 268 IPR036236 -
Apr2g2159 418 PANTHER OS08G0562300 PROTEIN 6 405 - -
Apr2g2159 418 SMART c2h2final6 243 265 IPR013087 -
Apr2g2159 418 SMART c2h2final6 300 333 IPR013087 -
Apr2g2159 418 SMART c2h2final6 338 360 IPR013087 -
Apr2g2159 418 ProSitePatterns Zinc finger C2H2 type domain signature. 245 265 IPR013087 -
Apr2g2159 418 Gene3D Classic Zinc Finger 235 303 - -
Apr2g2159 418 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 6 405 IPR044300 GO:0010044|GO:0010447
Apr2g2159 418 MobiDBLite consensus disorder prediction 197 222 - -
Apr2g2159 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 270 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2159 Apr-Chr2 26718023 26720160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2159 41 393 C2H2 Transcription Factor Family AT5G22890 48.619 1.03e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g2159 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2159 - - gsj:114375424 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2159 2 26718023 26720160 Apr2g2159 2 26718023 26720160 ECH
Apr2g2159 2 26718023 26720160 Apr3g1308 3 27546599 27547756 PCT