Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2156 ATGGCGAAGGGCACGGATTCCGACGAGTTTGTGTTGCTTTCTAGGGTACGTACGGGTCTCAAGAGGGAGTTTGCATTCGCCATGAAGGCGCAATCTGAGATCTGCGGTTCTCTGGGTAGAACCCGTGCCAGCAAGAACCGGGGCGAGGTTCCGGTTCAGACTGCCACGGCCAGCAAGCGGTCCAGGAAGACCGGTTCGATGGAGGAGGAGAAAGATGAGGCGGCGACGATGAAAAATTTGGAGGATGCAATGAGCGAGGAAGAGGCGAAAAGTGATGTGGTGGATCTTCAGAGCGATGACGAGCCTAAGAACCACGTGGGAGAATCAGCACCAATGCAGGTTTGCGAGGATGGACCTAAGAGTGATGTGGTGGTTGAAACTGTGATCAATGCAGAGCCTATTGTGGTAGAGTCGCTGAAGGAAGAGGTTGTGGATGAGATGGTGCAACCTCTTTGTGAAACCGAGGTTAAAGAGGAGATGGAGAAAGGCGATGCAGAGGAAAAGGGTGCTGTTGAGGTTGCACCGGTTTTGGTTGATGGTGATGATAAGGGGAGGATAATGCCGGCGGAGAAGATGGTTTCCCTGCAGAGGCGGTTCACACGGTCCGCATTGAAGCTGAAAACTGAGGAAACGAATGTAGGTAATGATGGGGAACATGCTAGTGACATTGCAATTGGAGTTGATGGTAGTGTTAAGAAGGAAATTGATGATTCGCCATTGACAACTACTCCTACTCAGGGGAAAGTTACCAAGAGTAGGTTGAAGAAGTTCCCTACGAAGCTGAAGGACCTTCTGGCTACAGGGATTCTTGAAGGTTTGTCAGTGAAGTATGTTAGGGGAACGAAGGCGCGAAGACCTGGAGAAGCCGGGCTTCGAGGGGTGATTAGAGACTCTGGGATTTTGTGCTTTTGTGATAATTGTAACGGGGTTGAGGTTGTCACGCCCTCTGTGTTTGAGCTGCATGCTGGTAGTGCAAATAAACGTCCCCCAGAGTATATATATCTTGAGAATGGAACTACACTCCGCGATGTGATGAATGCCTGCTGTGGTTTCCCATTGGACTCTCTGGAGGAAGCTGTCCAAAAGGTCCTTGGTGACTTTACTATGAAGAAATCTTCCATCTGTTTGAACTGCAGAGAAGCTTGCAAGGGTATGTCAAGACTAGTATGTGATTCATGCATGGAGTTGAAAGACTCTCAACCAAGTCCTTCTCAAACAGCTGCAGCAAGCAGCAAACGAGTTTCACAACCAGTTCAACCCAGATTACCAGAACCAGTTTTGGTTCCAAAGACATTAGACAATGAGATGCATCCAAATTCACTAAACAATGGGATGAAGCACAGCACGTCACGTAGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTCCGCTTGCATAAGTTGGTGTTTGAAGAAGATGTTCTGCCAGATGGAACTGAAGTAGCTTACTATGCTCATGGAAAGAAACTTTTGCTTGGATACAAAAAAGGATATGGGATTTTTTGTACCTGCTGTAGCTCTGAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAGCCATACCTGCACATCTACACATCTAATGGAGTTTCACTCCATGAGTTGTCCATCTCTTTATCGAAAGATCGGAGGTTTTCCACAAATGATAATGATGATCTCTGCAGCATATGTGAAGATGGAGGCGATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCATATAGATTGTGTCCCTCTACCATGCATTCCAAGTGGTACTTGGTATTGTAAGTATTGCCAGAATCTTTTCCAGAAGGACAGGCATGGAGAACATAATGTGAATGCTCTGGCAGCTGGAAGAATTGCAGGCACTGATATTTTGGAACAGATAAACCGCAGATGCATTCGTGTTGTCAAAACTGTAGAGGTTGGCCATGGTGGATGTGCCTTGTGCAGTCGTCATGATTTCAGTAAAAGCTTTGGTCCGCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGATCATAACATGCAGAACCTAGAGGAATTGCCTGAGGGAAATTGGTTCTGTAGCACAAATTGCAGTCAAATTCATTCAGCTCTGACAAATTTGGTGGCTTGTGGGGAGAAGAACATCCCAGATTCACTTCTAAGTTTGATTAAAAAAAAGCATGAAGAGAAAAGTTTAGACATTGTAGACGGTCTTGATATTAAATGGAGGGTTCTGAACTGGAAATTAGATACTTCTGTTGAGACTAGGAAATTGCTTTCCAAGGCTGTTGCCATTTTCCATGAGAGGTTTGATCCTATAGTTGATTCATCCTCTGGTCGTGATTTCATTCCAACAATGCTGTTTGGAAGGAACATCCGGGGTCAAGATTTTGGTGGAATGTACTGTGTTGTGCTTACTGTGAATGAGATTGTGGTGTCTGCTGGAATATTTCGTGTCTTTGGGCCAGAAATAGCAGAGCTTCCATTAGTGGCAACAATTGCTGATTACCAAGGACAGGGTTATTTTCAGTGCCTGTTTTCTTGCATTGAAACGCTACTTGGATCTTTAAGTGTAAGAAACCTTGTCCTACCAGCTGCTGATGAAGCTGAATCAATATGGACCAATAAATTTGGGTTTACAAAGTTAGGCCAAGATGAGATAAACAATTATAAGAAATTTTATCACATGATGATTTTTCAAGGGACCTCAGTATTACAGAAGCCTGTTTCTGCAGACTGA 2754 0.4495 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGSLGRTRASKNRGEVPVQTATASKRSRKTGSMEEEKDEAATMKNLEDAMSEEEAKSDVVDLQSDDEPKNHVGESAPMQVCEDGPKSDVVVETVINAEPIVVESLKEEVVDEMVQPLCETEVKEEMEKGDAEEKGAVEVAPVLVDGDDKGRIMPAEKMVSLQRRFTRSALKLKTEETNVGNDGEHASDIAIGVDGSVKKEIDDSPLTTTPTQGKVTKSRLKKFPTKLKDLLATGILEGLSVKYVRGTKARRPGEAGLRGVIRDSGILCFCDNCNGVEVVTPSVFELHAGSANKRPPEYIYLENGTTLRDVMNACCGFPLDSLEEAVQKVLGDFTMKKSSICLNCREACKGMSRLVCDSCMELKDSQPSPSQTAAASSKRVSQPVQPRLPEPVLVPKTLDNEMHPNSLNNGMKHSTSRSKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYAHGKKLLLGYKKGYGIFCTCCSSEVSASQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRFSTNDNDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNLFQKDRHGEHNVNALAAGRIAGTDILEQINRRCIRVVKTVEVGHGGCALCSRHDFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCSTNCSQIHSALTNLVACGEKNIPDSLLSLIKKKHEEKSLDIVDGLDIKWRVLNWKLDTSVETRKLLSKAVAIFHERFDPIVDSSSGRDFIPTMLFGRNIRGQDFGGMYCVVLTVNEIVVSAGIFRVFGPEIAELPLVATIADYQGQGYFQCLFSCIETLLGSLSVRNLVLPAADEAESIWTNKFGFTKLGQDEINNYKKFYHMMIFQGTSVLQKPVSAD* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2156 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 705 IPR013083 -
Apr2g2156 917 MobiDBLite consensus disorder prediction 62 106 - -
Apr2g2156 917 MobiDBLite consensus disorder prediction 400 417 - -
Apr2g2156 917 MobiDBLite consensus disorder prediction 435 452 - -
Apr2g2156 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 546 634 IPR013083 -
Apr2g2156 917 MobiDBLite consensus disorder prediction 400 458 - -
Apr2g2156 917 PANTHER AUTOIMMUNE REGULATOR 1 913 - -
Apr2g2156 917 PANTHER AUTOIMMUNE REGULATOR 1 913 - -
Apr2g2156 917 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 803 890 IPR016181 -
Apr2g2156 917 MobiDBLite consensus disorder prediction 41 118 - -
Apr2g2156 917 ProSitePatterns Zinc finger PHD-type signature. 560 599 IPR019786 -
Apr2g2156 917 Gene3D - 744 912 - -
Apr2g2156 917 CDD PHD1_AIRE 559 599 - -
Apr2g2156 917 ProSiteProfiles Zinc finger PHD-type profile. 557 602 IPR019787 -
Apr2g2156 917 MobiDBLite consensus disorder prediction 47 61 - -
Apr2g2156 917 Pfam Tify domain binding domain 293 348 IPR032308 -
Apr2g2156 917 Pfam Tify domain binding domain 493 541 IPR032308 -
Apr2g2156 917 Coils Coil 67 90 - -
Apr2g2156 917 SUPERFAMILY FYVE/PHD zinc finger 546 601 IPR011011 -
Apr2g2156 917 SUPERFAMILY FYVE/PHD zinc finger 645 701 IPR011011 -
Apr2g2156 917 SMART PHD_3 647 703 IPR001965 -
Apr2g2156 917 SMART PHD_3 559 600 IPR001965 -
Apr2g2156 917 Pfam PHD-finger 560 601 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2156 Apr-Chr2 26699029 26706492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2156 35 916 PHD Transcription Factor Family AT2G36720 40.166 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr2g2156 TDBD 4.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2156 - - gmx:100804381 1318.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2156 2 26699029 26706492 Apr2g2156 2 26699029 26706492 ECH
Apr2g2156 2 26699029 26706492 Apr3g1304 3 27527024 27532032 PCT